Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10850 | 3' | -64.3 | NC_002794.1 | + | 30059 | 0.67 | 0.578473 |
Target: 5'- --cCGGGCCCgcGGGGUCCgGucGCcCGGu -3' miRNA: 3'- gucGCCCGGG--UCCCAGGgCu-CGaGCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 90478 | 0.67 | 0.578473 |
Target: 5'- gCGGCGGGgCCGccGUCCCGcGCgaUCGGc -3' miRNA: 3'- -GUCGCCCgGGUccCAGGGCuCG--AGCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 5052 | 0.67 | 0.568181 |
Target: 5'- aGGUgGGGCCUuugacucaccgacAGGG-CCCGAGCgagacCGGa -3' miRNA: 3'- gUCG-CCCGGG-------------UCCCaGGGCUCGa----GCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 35971 | 0.67 | 0.535775 |
Target: 5'- cCGGaCGGGCCCGcucGcGGaCCCGguuuuauugucgcggGGCUCGGg -3' miRNA: 3'- -GUC-GCCCGGGU---C-CCaGGGC---------------UCGAGCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 101009 | 0.67 | 0.541288 |
Target: 5'- -cGCGGGCCUuccugucgGGGGaCgCGGGC-CGGg -3' miRNA: 3'- guCGCCCGGG--------UCCCaGgGCUCGaGCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 151603 | 0.67 | 0.532111 |
Target: 5'- -cGCGGGCCCGcGGUUCCucGGCUgaCGGc -3' miRNA: 3'- guCGCCCGGGUcCCAGGGc-UCGA--GCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 112259 | 0.67 | 0.532111 |
Target: 5'- cCGGCGGGaCCGGcGUCUCGucCUCGGc -3' miRNA: 3'- -GUCGCCCgGGUCcCAGGGCucGAGCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 4101 | 0.67 | 0.547743 |
Target: 5'- uGGCGGGCCCAGGaccccccaccccccGuucguUCCCGGGgUCu- -3' miRNA: 3'- gUCGCCCGGGUCC--------------C-----AGGGCUCgAGcc -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 111096 | 0.67 | 0.541288 |
Target: 5'- uCGGCGGGCCCGGcGGgaCCGuGGCcgUCGa -3' miRNA: 3'- -GUCGCCCGGGUC-CCagGGC-UCG--AGCc -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 126379 | 0.67 | 0.559795 |
Target: 5'- -cGUGGGCgCCGGGG-CCUGcGCggCGGc -3' miRNA: 3'- guCGCCCG-GGUCCCaGGGCuCGa-GCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 3833 | 0.67 | 0.559795 |
Target: 5'- aGGCGGaGCCUAGGcGgggCuuGAGCccCGGa -3' miRNA: 3'- gUCGCC-CGGGUCC-Ca--GggCUCGa-GCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 14725 | 0.67 | 0.559795 |
Target: 5'- gCGGCuucGGCUCGGGGUCCgGcGCgucaUCGGa -3' miRNA: 3'- -GUCGc--CCGGGUCCCAGGgCuCG----AGCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 186019 | 0.67 | 0.559795 |
Target: 5'- --cCGGGCCCGGGcccggaCCCGGGCccCGGc -3' miRNA: 3'- gucGCCCGGGUCCca----GGGCUCGa-GCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 49160 | 0.67 | 0.569115 |
Target: 5'- cCAGCGGGCcguCCGGGaGg-CCGAGCccaCGGc -3' miRNA: 3'- -GUCGCCCG---GGUCC-CagGGCUCGa--GCC- -5' |
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10850 | 3' | -64.3 | NC_002794.1 | + | 176961 | 0.66 | 0.644587 |
Target: 5'- gCAGCGGGaCCUccGGGuaUCCCGGGaguaccagCGGg -3' miRNA: 3'- -GUCGCCC-GGGu-CCC--AGGGCUCga------GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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