miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10851 3' -51.4 NC_002794.1 + 152207 0.66 0.995904
Target:  5'- cGUUCCGcccgGAGGcGUCggacgucgcgCGCCACGUCg -3'
miRNA:   3'- uCGAGGCaa--UUUCuCAG----------GUGGUGCAG- -5'
10851 3' -51.4 NC_002794.1 + 90116 0.66 0.994455
Target:  5'- gGGCgCCGU--GAGucuGUaCCGCUACGUCc -3'
miRNA:   3'- -UCGaGGCAauUUCu--CA-GGUGGUGCAG- -5'
10851 3' -51.4 NC_002794.1 + 69264 0.66 0.992409
Target:  5'- cGCUCCGUacguucccGGUCCGCCGCc-- -3'
miRNA:   3'- uCGAGGCAauuuc---UCAGGUGGUGcag -5'
10851 3' -51.4 NC_002794.1 + 107258 0.67 0.990324
Target:  5'- uGGC-CCGgcGGAGccgcgccGUCCGCCGcCGUCg -3'
miRNA:   3'- -UCGaGGCaaUUUCu------CAGGUGGU-GCAG- -5'
10851 3' -51.4 NC_002794.1 + 44633 0.67 0.98588
Target:  5'- gGGCUCCGU------GUCCGCCGCa-- -3'
miRNA:   3'- -UCGAGGCAauuucuCAGGUGGUGcag -5'
10851 3' -51.4 NC_002794.1 + 86851 0.67 0.98588
Target:  5'- cGGCcccgCCGggAuuGGGUCUGCCGCGg- -3'
miRNA:   3'- -UCGa---GGCaaUuuCUCAGGUGGUGCag -5'
10851 3' -51.4 NC_002794.1 + 102366 0.68 0.984095
Target:  5'- cGCUUCG-UGAAGAcggugGUCCGCgACGUg -3'
miRNA:   3'- uCGAGGCaAUUUCU-----CAGGUGgUGCAg -5'
10851 3' -51.4 NC_002794.1 + 129243 0.68 0.982144
Target:  5'- cGGCUCCGgcGGAcucGGGUCgagCGCCuCGUCg -3'
miRNA:   3'- -UCGAGGCaaUUU---CUCAG---GUGGuGCAG- -5'
10851 3' -51.4 NC_002794.1 + 118782 0.68 0.980019
Target:  5'- cGCUCCGUc--AGGcUCCGCaGCGUCg -3'
miRNA:   3'- uCGAGGCAauuUCUcAGGUGgUGCAG- -5'
10851 3' -51.4 NC_002794.1 + 108400 0.68 0.980019
Target:  5'- aGGCUCCGgcggcGGcGcCCACCACGg- -3'
miRNA:   3'- -UCGAGGCaauu-UCuCaGGUGGUGCag -5'
10851 3' -51.4 NC_002794.1 + 64396 0.68 0.975211
Target:  5'- cGCcCCGgccAGAGGG-CCACCGuCGUCa -3'
miRNA:   3'- uCGaGGCaa-UUUCUCaGGUGGU-GCAG- -5'
10851 3' -51.4 NC_002794.1 + 125864 0.69 0.972514
Target:  5'- aAGCgggCCGUgugGGAGAG-CUGCCuCGUCu -3'
miRNA:   3'- -UCGa--GGCAa--UUUCUCaGGUGGuGCAG- -5'
10851 3' -51.4 NC_002794.1 + 8294 0.69 0.965187
Target:  5'- cAGCUCCGacGAGGAGggcgaaggcggcaCCGCCGCGcCc -3'
miRNA:   3'- -UCGAGGCaaUUUCUCa------------GGUGGUGCaG- -5'
10851 3' -51.4 NC_002794.1 + 106744 0.69 0.96316
Target:  5'- uGCUCCGggucaacGAGUCCAUCGuCGUg -3'
miRNA:   3'- uCGAGGCaauuu--CUCAGGUGGU-GCAg -5'
10851 3' -51.4 NC_002794.1 + 63999 0.69 0.96316
Target:  5'- gGGCUCCGUcu--GGGUCCugCggcuggcgAUGUCg -3'
miRNA:   3'- -UCGAGGCAauuuCUCAGGugG--------UGCAG- -5'
10851 3' -51.4 NC_002794.1 + 146565 0.69 0.9596
Target:  5'- gGGC-CCGaguuccGAGUCCGCCGCGg- -3'
miRNA:   3'- -UCGaGGCaauuu-CUCAGGUGGUGCag -5'
10851 3' -51.4 NC_002794.1 + 172589 0.7 0.951787
Target:  5'- cAGUUCCGUUGGGGGaUgCGCC-CGUCc -3'
miRNA:   3'- -UCGAGGCAAUUUCUcAgGUGGuGCAG- -5'
10851 3' -51.4 NC_002794.1 + 185972 0.71 0.910822
Target:  5'- --gUCCGUUcccGGGUCCGCCACcGUCu -3'
miRNA:   3'- ucgAGGCAAuuuCUCAGGUGGUG-CAG- -5'
10851 3' -51.4 NC_002794.1 + 156507 0.72 0.882326
Target:  5'- cGGC-CCGUUGAucgcGAGUCCGCggugaggguuccguCGCGUCg -3'
miRNA:   3'- -UCGaGGCAAUUu---CUCAGGUG--------------GUGCAG- -5'
10851 3' -51.4 NC_002794.1 + 14726 0.77 0.654483
Target:  5'- cGGCUUCGgcucGGGGUCCGgCGCGUCa -3'
miRNA:   3'- -UCGAGGCaauuUCUCAGGUgGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.