miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10851 5' -56.7 NC_002794.1 + 151061 0.66 0.928689
Target:  5'- aCGGcCGC-GCAGgUCGCGGAUuuCCUg -3'
miRNA:   3'- -GUCuGCGaCGUUgAGCGCCUGcuGGA- -5'
10851 5' -56.7 NC_002794.1 + 141548 0.66 0.928689
Target:  5'- aAGGCGCgaauccGCcACcCGCGGccGCGGCCUc -3'
miRNA:   3'- gUCUGCGa-----CGuUGaGCGCC--UGCUGGA- -5'
10851 5' -56.7 NC_002794.1 + 42596 0.66 0.928689
Target:  5'- aGGGCGCgGCGGCcgggaGCGGgcucucucgACGACCg -3'
miRNA:   3'- gUCUGCGaCGUUGag---CGCC---------UGCUGGa -5'
10851 5' -56.7 NC_002794.1 + 130138 0.66 0.928689
Target:  5'- uUAGACGCUGCGcggcGCgagCGCGGgaucacgcgcGCGagaGCCg -3'
miRNA:   3'- -GUCUGCGACGU----UGa--GCGCC----------UGC---UGGa -5'
10851 5' -56.7 NC_002794.1 + 149284 0.66 0.928175
Target:  5'- -cGGCGCgGCGGCUCGCucacgggGGGCGGgUg -3'
miRNA:   3'- guCUGCGaCGUUGAGCG-------CCUGCUgGa -5'
10851 5' -56.7 NC_002794.1 + 44170 0.66 0.928175
Target:  5'- -cGGCGCgagcgGCGGCUCGUcgacuccGGGCGaaGCCg -3'
miRNA:   3'- guCUGCGa----CGUUGAGCG-------CCUGC--UGGa -5'
10851 5' -56.7 NC_002794.1 + 113395 0.66 0.923446
Target:  5'- gCAGGCGCUGCAGCaCcCGGAgcUGGuCCa -3'
miRNA:   3'- -GUCUGCGACGUUGaGcGCCU--GCU-GGa -5'
10851 5' -56.7 NC_002794.1 + 20987 0.66 0.917973
Target:  5'- -cGGCgGCgGCAGCgacCGCGG-CGGCCa -3'
miRNA:   3'- guCUG-CGaCGUUGa--GCGCCuGCUGGa -5'
10851 5' -56.7 NC_002794.1 + 153130 0.66 0.917973
Target:  5'- uCGGugGCgGCAGCgggUC-CGGAaCGGCCUu -3'
miRNA:   3'- -GUCugCGaCGUUG---AGcGCCU-GCUGGA- -5'
10851 5' -56.7 NC_002794.1 + 38618 0.66 0.917973
Target:  5'- aCGGGCGCguccCGACUCGCcGGuGCGGCg- -3'
miRNA:   3'- -GUCUGCGac--GUUGAGCG-CC-UGCUGga -5'
10851 5' -56.7 NC_002794.1 + 49060 0.66 0.917973
Target:  5'- aGGGCGCgcaGCAcgACUCGCGGu--ACCa -3'
miRNA:   3'- gUCUGCGa--CGU--UGAGCGCCugcUGGa -5'
10851 5' -56.7 NC_002794.1 + 68779 0.66 0.917414
Target:  5'- cCGGACGCccgGCu-CUCGCgccccggcuaacaGGACGACUc -3'
miRNA:   3'- -GUCUGCGa--CGuuGAGCG-------------CCUGCUGGa -5'
10851 5' -56.7 NC_002794.1 + 134668 0.66 0.912273
Target:  5'- cCGGuCGCUGCAACgcggcCGCGcuuggcuCGACCg -3'
miRNA:   3'- -GUCuGCGACGUUGa----GCGCcu-----GCUGGa -5'
10851 5' -56.7 NC_002794.1 + 64802 0.66 0.912273
Target:  5'- -cGGCGa-GCGACgcCGCGGACGGCg- -3'
miRNA:   3'- guCUGCgaCGUUGa-GCGCCUGCUGga -5'
10851 5' -56.7 NC_002794.1 + 118043 0.66 0.912273
Target:  5'- gCAGGCGagcgugGCccguCUCGCGGAagaCGGCCg -3'
miRNA:   3'- -GUCUGCga----CGuu--GAGCGCCU---GCUGGa -5'
10851 5' -56.7 NC_002794.1 + 101989 0.66 0.912273
Target:  5'- uCGGcCGCgacaUGCu-CUCGCGGAccuCGGCCUa -3'
miRNA:   3'- -GUCuGCG----ACGuuGAGCGCCU---GCUGGA- -5'
10851 5' -56.7 NC_002794.1 + 151490 0.66 0.912273
Target:  5'- gAGugGCUGUAcaaacgcgugcGCUCGguuCGGGUGGCCUg -3'
miRNA:   3'- gUCugCGACGU-----------UGAGC---GCCUGCUGGA- -5'
10851 5' -56.7 NC_002794.1 + 132185 0.66 0.906345
Target:  5'- cUAGACGCUcCGACUgGgGGACGGgUg -3'
miRNA:   3'- -GUCUGCGAcGUUGAgCgCCUGCUgGa -5'
10851 5' -56.7 NC_002794.1 + 98947 0.66 0.906345
Target:  5'- aAGGgGCUGgGGCUCGUgcuGGGCG-CCg -3'
miRNA:   3'- gUCUgCGACgUUGAGCG---CCUGCuGGa -5'
10851 5' -56.7 NC_002794.1 + 81596 0.67 0.900192
Target:  5'- aCGGAccCGCgGCcgGAgUCGCGGACGAgCa -3'
miRNA:   3'- -GUCU--GCGaCG--UUgAGCGCCUGCUgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.