miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 65185 0.66 0.762939
Target:  5'- cGGCGG-GUGCCGGCGAG-GUCGgAcccUCa -3'
miRNA:   3'- -UUGCCaCGCGGCUGCUCgCGGCgU---AG- -5'
10852 3' -60.8 NC_002794.1 + 90610 0.66 0.762939
Target:  5'- cGACGGUcGCgGUgGAUGAGCGCgGaaCGUCa -3'
miRNA:   3'- -UUGCCA-CG-CGgCUGCUCGCGgC--GUAG- -5'
10852 3' -60.8 NC_002794.1 + 138939 0.66 0.762939
Target:  5'- -cCGGUGCGCCcccaccGugGcGUGCUGCGa- -3'
miRNA:   3'- uuGCCACGCGG------CugCuCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 124258 0.66 0.762939
Target:  5'- cGCGGguaGuCGCCGGCcAGcCGCCGCGc- -3'
miRNA:   3'- uUGCCa--C-GCGGCUGcUC-GCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 91880 0.66 0.762026
Target:  5'- uGGCGGcgGCgGCCgcGACGAGCaguucacGCCGCAg- -3'
miRNA:   3'- -UUGCCa-CG-CGG--CUGCUCG-------CGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 49860 0.66 0.753761
Target:  5'- -uCGGcgGCGCCcgccacccggacGugGAGCGcCCGCAg- -3'
miRNA:   3'- uuGCCa-CGCGG------------CugCUCGC-GGCGUag -5'
10852 3' -60.8 NC_002794.1 + 14500 0.66 0.753761
Target:  5'- cGGCGGcccGCGCucgCGGCGcucguGGCGCCGC-UCg -3'
miRNA:   3'- -UUGCCa--CGCG---GCUGC-----UCGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 129236 0.66 0.753761
Target:  5'- gAACGGgcgGCuCCGGCggacucgggucGAGCGCCuCGUCg -3'
miRNA:   3'- -UUGCCa--CGcGGCUG-----------CUCGCGGcGUAG- -5'
10852 3' -60.8 NC_002794.1 + 117519 0.66 0.753761
Target:  5'- --gGGUGCGCCGGCGcaucugcuccaGGUuGCCGUg-- -3'
miRNA:   3'- uugCCACGCGGCUGC-----------UCG-CGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 49448 0.66 0.753761
Target:  5'- cGCGGU-CGUCGcCGuGGCGCCGCcgUg -3'
miRNA:   3'- uUGCCAcGCGGCuGC-UCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 52886 0.66 0.753761
Target:  5'- cGAUGGUgGgGUCGaACGcGGCGCCGCcgCc -3'
miRNA:   3'- -UUGCCA-CgCGGC-UGC-UCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 125522 0.66 0.753761
Target:  5'- aAACGGccgucGCGgCGaACGAGCGCgGCGg- -3'
miRNA:   3'- -UUGCCa----CGCgGC-UGCUCGCGgCGUag -5'
10852 3' -60.8 NC_002794.1 + 130671 0.66 0.753761
Target:  5'- cGCGGgcucCGCCG-CGgccucgugggaGGCGCCGUGUCg -3'
miRNA:   3'- uUGCCac--GCGGCuGC-----------UCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 55402 0.66 0.752837
Target:  5'- aGGCGGccgagGCgGCCGAgGcgaccccGGCGuCCGCGUCg -3'
miRNA:   3'- -UUGCCa----CG-CGGCUgC-------UCGC-GGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 140688 0.66 0.744483
Target:  5'- -uCGGUGCGaCgGACcGGcCGCCGCGa- -3'
miRNA:   3'- uuGCCACGC-GgCUGcUC-GCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 123809 0.66 0.744483
Target:  5'- -uCGGggGCGCgGACGAgcaggagcgGCGCC-CGUCg -3'
miRNA:   3'- uuGCCa-CGCGgCUGCU---------CGCGGcGUAG- -5'
10852 3' -60.8 NC_002794.1 + 116446 0.66 0.744483
Target:  5'- cGACGGUGgCGaugaCGAaGAGCGgCCGguUCu -3'
miRNA:   3'- -UUGCCAC-GCg---GCUgCUCGC-GGCguAG- -5'
10852 3' -60.8 NC_002794.1 + 26086 0.66 0.744483
Target:  5'- cGCGGggcaGCGCCGACGgccccGGCGaUCGCcgUg -3'
miRNA:   3'- uUGCCa---CGCGGCUGC-----UCGC-GGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 124527 0.66 0.744483
Target:  5'- --aGGaGcCGCCGACGcuGGCGCUGCGg- -3'
miRNA:   3'- uugCCaC-GCGGCUGC--UCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 91145 0.66 0.744483
Target:  5'- cGCGGacgGUGCUGcUGGGCGCCGUg-- -3'
miRNA:   3'- uUGCCa--CGCGGCuGCUCGCGGCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.