miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 44099 1.07 0.001747
Target:  5'- uAACGGUGCGCCGACGAGCGCCGCAUCa -3'
miRNA:   3'- -UUGCCACGCGGCUGCUCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 34858 0.82 0.099391
Target:  5'- gAGCGG-GCGCCG-CGGGCGCCGCGg- -3'
miRNA:   3'- -UUGCCaCGCGGCuGCUCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 67210 0.77 0.203372
Target:  5'- gGGCGGUGCGCuCGGCGccgGGCGgcuaaCCGCGUCu -3'
miRNA:   3'- -UUGCCACGCG-GCUGC---UCGC-----GGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 37757 0.77 0.213263
Target:  5'- cGCGGcgGCGCCGGCGGGagcgGCCGuCGUCg -3'
miRNA:   3'- uUGCCa-CGCGGCUGCUCg---CGGC-GUAG- -5'
10852 3' -60.8 NC_002794.1 + 106339 0.76 0.223563
Target:  5'- cGACGGUuCGCCGggucgacggcggGCGGGCGCCGguUCg -3'
miRNA:   3'- -UUGCCAcGCGGC------------UGCUCGCGGCguAG- -5'
10852 3' -60.8 NC_002794.1 + 107223 0.75 0.28153
Target:  5'- -cCGGgcgGCGCgCGACGGGgGCgGCGUCg -3'
miRNA:   3'- uuGCCa--CGCG-GCUGCUCgCGgCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 89397 0.74 0.301104
Target:  5'- cGCGGUGagGuCCGugGAGCGCCGgcgcCAUCa -3'
miRNA:   3'- uUGCCACg-C-GGCugCUCGCGGC----GUAG- -5'
10852 3' -60.8 NC_002794.1 + 86937 0.74 0.314728
Target:  5'- aGGCGGgGCGggauCCGGCGAGCGUCGaCGUCc -3'
miRNA:   3'- -UUGCCaCGC----GGCUGCUCGCGGC-GUAG- -5'
10852 3' -60.8 NC_002794.1 + 99376 0.74 0.321008
Target:  5'- aAGCGGgagGUGCCGACGAuggugGCGCCGUccgcccgcccgccGUCg -3'
miRNA:   3'- -UUGCCa--CGCGGCUGCU-----CGCGGCG-------------UAG- -5'
10852 3' -60.8 NC_002794.1 + 119794 0.74 0.328812
Target:  5'- -cCGGUcCGCCGACuuGAGCGUCGCGUg -3'
miRNA:   3'- uuGCCAcGCGGCUG--CUCGCGGCGUAg -5'
10852 3' -60.8 NC_002794.1 + 111631 0.74 0.328812
Target:  5'- cGCGGccGcCGCCGGuCGGGCGCCGCGg- -3'
miRNA:   3'- uUGCCa-C-GCGGCU-GCUCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 118271 0.73 0.343356
Target:  5'- gGGCGGcgGCGCCGGCGucggggaccGCGCCgggcGCGUCg -3'
miRNA:   3'- -UUGCCa-CGCGGCUGCu--------CGCGG----CGUAG- -5'
10852 3' -60.8 NC_002794.1 + 177342 0.73 0.373813
Target:  5'- gAGCGGUGgGCuCGACGAuaGCGCuCGC-UCg -3'
miRNA:   3'- -UUGCCACgCG-GCUGCU--CGCG-GCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 120081 0.72 0.381709
Target:  5'- cGGCGGUgGCGgCGACGAccgugccgagcGCGCCGCGc- -3'
miRNA:   3'- -UUGCCA-CGCgGCUGCU-----------CGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 61520 0.72 0.381709
Target:  5'- gGACGGcgGcCGCCGGCGGcCGCCGCGa- -3'
miRNA:   3'- -UUGCCa-C-GCGGCUGCUcGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 12227 0.72 0.381709
Target:  5'- -uCGGcgGCGCCGGCG-GCGCCGuCcgCg -3'
miRNA:   3'- uuGCCa-CGCGGCUGCuCGCGGC-GuaG- -5'
10852 3' -60.8 NC_002794.1 + 60632 0.72 0.389714
Target:  5'- gGGCGGacccgGCGCCGGCG-GCGCCGg--- -3'
miRNA:   3'- -UUGCCa----CGCGGCUGCuCGCGGCguag -5'
10852 3' -60.8 NC_002794.1 + 55280 0.72 0.406051
Target:  5'- cGGCGGUgGCGgCGACGAGgGCgGCGg- -3'
miRNA:   3'- -UUGCCA-CGCgGCUGCUCgCGgCGUag -5'
10852 3' -60.8 NC_002794.1 + 134001 0.72 0.406051
Target:  5'- -uCGGU-CGCCGgguGCGAGCGCUGCAcggUCg -3'
miRNA:   3'- uuGCCAcGCGGC---UGCUCGCGGCGU---AG- -5'
10852 3' -60.8 NC_002794.1 + 141432 0.72 0.41438
Target:  5'- cGGCGGggGCGCCGG-GGGCGCCGgGa- -3'
miRNA:   3'- -UUGCCa-CGCGGCUgCUCGCGGCgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.