miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 104887 0.71 0.429633
Target:  5'- aAGCGGgccggccgcgagGCGCCGugcugcucgaGCaGGCGCCGCGUCu -3'
miRNA:   3'- -UUGCCa-----------CGCGGC----------UGcUCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 145564 0.71 0.431347
Target:  5'- -cCGGUuCGCgGACGAGCGCCGaCGg- -3'
miRNA:   3'- uuGCCAcGCGgCUGCUCGCGGC-GUag -5'
10852 3' -60.8 NC_002794.1 + 103815 0.71 0.431347
Target:  5'- cGACGGcgGCGCCGACGuGgaGUCGCAg- -3'
miRNA:   3'- -UUGCCa-CGCGGCUGCuCg-CGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 49612 0.71 0.439982
Target:  5'- cGGCGG-GCGCCGGCG-GCGCCuCGc- -3'
miRNA:   3'- -UUGCCaCGCGGCUGCuCGCGGcGUag -5'
10852 3' -60.8 NC_002794.1 + 107137 0.71 0.448715
Target:  5'- cGACGGgaacgacgucgGCGCCcccGGCGAGgGCCGCcgCu -3'
miRNA:   3'- -UUGCCa----------CGCGG---CUGCUCgCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 102345 0.71 0.457542
Target:  5'- -cUGGUGCGCaaGACGGcGUGCCGCuUCg -3'
miRNA:   3'- uuGCCACGCGg-CUGCU-CGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 67019 0.71 0.466462
Target:  5'- cGGCGGcgGCgGCCGGCuccCGCCGCGUCg -3'
miRNA:   3'- -UUGCCa-CG-CGGCUGcucGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 121765 0.71 0.466462
Target:  5'- uGGCGGUGC-CCGA--GGCGCCGCcgAUCc -3'
miRNA:   3'- -UUGCCACGcGGCUgcUCGCGGCG--UAG- -5'
10852 3' -60.8 NC_002794.1 + 31898 0.71 0.47547
Target:  5'- cAGCGGcGCgucGCUGAUGAGCGCCGaCAg- -3'
miRNA:   3'- -UUGCCaCG---CGGCUGCUCGCGGC-GUag -5'
10852 3' -60.8 NC_002794.1 + 54241 0.71 0.47547
Target:  5'- aAGCGGccgaGCGCgCGguccACG-GCGCCGCGUCg -3'
miRNA:   3'- -UUGCCa---CGCG-GC----UGCuCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 99779 0.71 0.47547
Target:  5'- cGCGGUgccgGCGUCGAcuaCGAGCGCgCGCcgCg -3'
miRNA:   3'- uUGCCA----CGCGGCU---GCUCGCG-GCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 88930 0.7 0.484565
Target:  5'- cGCGGUGCGgCGAUG-GCGCgGUGUa -3'
miRNA:   3'- uUGCCACGCgGCUGCuCGCGgCGUAg -5'
10852 3' -60.8 NC_002794.1 + 96917 0.7 0.484565
Target:  5'- uGGCGGagGCGCCGGCGAcagcaCGCCGUcggaGUCu -3'
miRNA:   3'- -UUGCCa-CGCGGCUGCUc----GCGGCG----UAG- -5'
10852 3' -60.8 NC_002794.1 + 12417 0.7 0.484565
Target:  5'- gGACGGcgcGCGCCGACuGGCagcugucCCGCGUCa -3'
miRNA:   3'- -UUGCCa--CGCGGCUGcUCGc------GGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 126593 0.7 0.493742
Target:  5'- -cCGGgacugaGCGCCGAgGccGGCGCCGaCGUCg -3'
miRNA:   3'- uuGCCa-----CGCGGCUgC--UCGCGGC-GUAG- -5'
10852 3' -60.8 NC_002794.1 + 116950 0.7 0.499286
Target:  5'- cGGCGGcgGCGUCGGCGGGCGCaggaacgggcccaGCAggUCg -3'
miRNA:   3'- -UUGCCa-CGCGGCUGCUCGCGg------------CGU--AG- -5'
10852 3' -60.8 NC_002794.1 + 106252 0.7 0.502997
Target:  5'- -cCGccGCGaaCCGGCGAGCGCCGCgcGUCg -3'
miRNA:   3'- uuGCcaCGC--GGCUGCUCGCGGCG--UAG- -5'
10852 3' -60.8 NC_002794.1 + 53662 0.7 0.509521
Target:  5'- aAACGGUGCuccaggacggauccGuCCGucaaACgGAGCGCCGCGUCc -3'
miRNA:   3'- -UUGCCACG--------------C-GGC----UG-CUCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 145717 0.7 0.512328
Target:  5'- aAACGGggaucggGCGCUggaGGCGgcGGCGCCgGCAUCg -3'
miRNA:   3'- -UUGCCa------CGCGG---CUGC--UCGCGG-CGUAG- -5'
10852 3' -60.8 NC_002794.1 + 65932 0.7 0.518901
Target:  5'- cGGCGGUgGCGUCGgcggcgguaucgucGCGAGCGgCgGCGUCu -3'
miRNA:   3'- -UUGCCA-CGCGGC--------------UGCUCGC-GgCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.