miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 123809 0.66 0.744483
Target:  5'- -uCGGggGCGCgGACGAgcaggagcgGCGCC-CGUCg -3'
miRNA:   3'- uuGCCa-CGCGgCUGCU---------CGCGGcGUAG- -5'
10852 3' -60.8 NC_002794.1 + 58017 0.66 0.74355
Target:  5'- -cCGGggccGcCGCCGGCGAacccgccGCGCCGCccGUCc -3'
miRNA:   3'- uuGCCa---C-GCGGCUGCU-------CGCGGCG--UAG- -5'
10852 3' -60.8 NC_002794.1 + 31528 0.66 0.735114
Target:  5'- -cCGGuUGCG-CGGCGAGCcCCGaCGUCu -3'
miRNA:   3'- uuGCC-ACGCgGCUGCUCGcGGC-GUAG- -5'
10852 3' -60.8 NC_002794.1 + 49235 0.66 0.735114
Target:  5'- cAACaGG-GcCGUCGACGGGCGcCCGCGc- -3'
miRNA:   3'- -UUG-CCaC-GCGGCUGCUCGC-GGCGUag -5'
10852 3' -60.8 NC_002794.1 + 92492 0.66 0.735114
Target:  5'- -cCGGUGCGUgGACGAG-GCgGCc-- -3'
miRNA:   3'- uuGCCACGCGgCUGCUCgCGgCGuag -5'
10852 3' -60.8 NC_002794.1 + 122997 0.66 0.735114
Target:  5'- uGCGGgccGUGCUGACGGGCcggcugGCCGUcgUg -3'
miRNA:   3'- uUGCCa--CGCGGCUGCUCG------CGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 99587 0.66 0.735114
Target:  5'- uGCGGaggGCGCggCGGCGGcgcgcgcucGCGCCGCcUCg -3'
miRNA:   3'- uUGCCa--CGCG--GCUGCU---------CGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 69761 0.66 0.735114
Target:  5'- cGCGGggaugGCGacgaagaucCCGACGAGCcacgagagcgccGCCGCGUa -3'
miRNA:   3'- uUGCCa----CGC---------GGCUGCUCG------------CGGCGUAg -5'
10852 3' -60.8 NC_002794.1 + 82620 0.66 0.735114
Target:  5'- cACGGaacUGCgcgaacucauccGCCGGCGccagaAGCGCCGCGcUCg -3'
miRNA:   3'- uUGCC---ACG------------CGGCUGC-----UCGCGGCGU-AG- -5'
10852 3' -60.8 NC_002794.1 + 59888 0.66 0.734172
Target:  5'- cACGGcgcaccUGCGCCGcgugcgcagcgacAUGGGCGCcCGCGUg -3'
miRNA:   3'- uUGCC------ACGCGGC-------------UGCUCGCG-GCGUAg -5'
10852 3' -60.8 NC_002794.1 + 84433 0.66 0.725662
Target:  5'- cGACGGcgacGUGCCGaACGAGgGCCuGCcgCc -3'
miRNA:   3'- -UUGCCa---CGCGGC-UGCUCgCGG-CGuaG- -5'
10852 3' -60.8 NC_002794.1 + 102631 0.66 0.725662
Target:  5'- uGGCGGUcaucCGCCGGCuGGCGgCGCGcUCg -3'
miRNA:   3'- -UUGCCAc---GCGGCUGcUCGCgGCGU-AG- -5'
10852 3' -60.8 NC_002794.1 + 46313 0.66 0.725662
Target:  5'- gAGCGcG-GCGgCGACG-GCGCCGUcgCc -3'
miRNA:   3'- -UUGC-CaCGCgGCUGCuCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 90098 0.66 0.725662
Target:  5'- cACGcucUGCGCCGcggUGGGCGCCGUgaGUCu -3'
miRNA:   3'- uUGCc--ACGCGGCu--GCUCGCGGCG--UAG- -5'
10852 3' -60.8 NC_002794.1 + 38498 0.66 0.725662
Target:  5'- cGCGGcgGCGCCGGuCGc-CGCCGCcUCc -3'
miRNA:   3'- uUGCCa-CGCGGCU-GCucGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 151584 0.66 0.725662
Target:  5'- cGGCGGcgcGCGCCGccgccGCGGGC-CCGCGg- -3'
miRNA:   3'- -UUGCCa--CGCGGC-----UGCUCGcGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 77354 0.66 0.725662
Target:  5'- gGAgGGgcacugcGCGCUGAccgucuacaaguCGAGCGCCGC-UCa -3'
miRNA:   3'- -UUgCCa------CGCGGCU------------GCUCGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 141666 0.66 0.725662
Target:  5'- cGGCGGgucgaGCGaaGACGGGuCGCCGUAc- -3'
miRNA:   3'- -UUGCCa----CGCggCUGCUC-GCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 67418 0.66 0.725662
Target:  5'- cGGCGccaGCGUCGGCGGcgugucGCGCCGCuUCg -3'
miRNA:   3'- -UUGCca-CGCGGCUGCU------CGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 185104 0.66 0.719955
Target:  5'- -cCGGUcguguuguacagcauGUGCaCGACcaggcGGCGCCGCGUCg -3'
miRNA:   3'- uuGCCA---------------CGCG-GCUGc----UCGCGGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.