miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 53299 0.66 0.716137
Target:  5'- --aGGUGCcgagcgGUCGGCcGGCGCCGCGa- -3'
miRNA:   3'- uugCCACG------CGGCUGcUCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 107528 0.66 0.716137
Target:  5'- cGACGGccggcgcgGCGCCGGCG-GCGacgaCCGCGg- -3'
miRNA:   3'- -UUGCCa-------CGCGGCUGCuCGC----GGCGUag -5'
10852 3' -60.8 NC_002794.1 + 110618 0.66 0.716137
Target:  5'- gAGCGGga-GCCG-CG-GCGCCGCGg- -3'
miRNA:   3'- -UUGCCacgCGGCuGCuCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 121041 0.66 0.716137
Target:  5'- gAGCGGcGCGU---CGGGCGCCGCGa- -3'
miRNA:   3'- -UUGCCaCGCGgcuGCUCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 193280 0.66 0.716137
Target:  5'- cAGCGGcgUGCGCCGGuagucgccgucCGcuccGCGCCGCAc- -3'
miRNA:   3'- -UUGCC--ACGCGGCU-----------GCu---CGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 179239 0.66 0.716137
Target:  5'- cAACaGGUcgGCGUCGGCGAGacCGCCGCc-- -3'
miRNA:   3'- -UUG-CCA--CGCGGCUGCUC--GCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 76535 0.66 0.716137
Target:  5'- -cCGGccgcgGCGCCGACGcggucgcGCGCCGgGUa -3'
miRNA:   3'- uuGCCa----CGCGGCUGCu------CGCGGCgUAg -5'
10852 3' -60.8 NC_002794.1 + 11646 0.66 0.716137
Target:  5'- cGACGG-GCgGCCGACGAcGCGgcCCGCc-- -3'
miRNA:   3'- -UUGCCaCG-CGGCUGCU-CGC--GGCGuag -5'
10852 3' -60.8 NC_002794.1 + 44719 0.66 0.716137
Target:  5'- cGCGGcGaCGUCGGCcGGCGCCGCc-- -3'
miRNA:   3'- uUGCCaC-GCGGCUGcUCGCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 10647 0.66 0.71518
Target:  5'- gAGCGGcGCGagcCCGACGAGCgucuggaGCCGCc-- -3'
miRNA:   3'- -UUGCCaCGC---GGCUGCUCG-------CGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 190435 0.67 0.706545
Target:  5'- cAGCaGGUGCGacaCGAaauaCGuGCGCgGCGUCg -3'
miRNA:   3'- -UUG-CCACGCg--GCU----GCuCGCGgCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 20529 0.67 0.706545
Target:  5'- cAACGGacugGCGUucgcgaCGACGGGCGaCCGgAUCc -3'
miRNA:   3'- -UUGCCa---CGCG------GCUGCUCGC-GGCgUAG- -5'
10852 3' -60.8 NC_002794.1 + 55803 0.67 0.706545
Target:  5'- gAGCGcaGCGCCGggcGCGGGCGCgCGCu-- -3'
miRNA:   3'- -UUGCcaCGCGGC---UGCUCGCG-GCGuag -5'
10852 3' -60.8 NC_002794.1 + 14644 0.67 0.696894
Target:  5'- cACGGaGaCGCCGGCGc-CGCgGCGUCg -3'
miRNA:   3'- uUGCCaC-GCGGCUGCucGCGgCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 63480 0.67 0.696894
Target:  5'- cGGCGGccGcCGUCGACGA-CGCCGCGg- -3'
miRNA:   3'- -UUGCCa-C-GCGGCUGCUcGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 14455 0.67 0.696894
Target:  5'- cGCGG-GCGaCCGugucgaGCGGcGCGCCGCGcUCg -3'
miRNA:   3'- uUGCCaCGC-GGC------UGCU-CGCGGCGU-AG- -5'
10852 3' -60.8 NC_002794.1 + 127803 0.67 0.687193
Target:  5'- -cCGaGUcGaCGCCGAgCGAGCGCC-CGUCg -3'
miRNA:   3'- uuGC-CA-C-GCGGCU-GCUCGCGGcGUAG- -5'
10852 3' -60.8 NC_002794.1 + 128846 0.67 0.687193
Target:  5'- gAGCGccgGCGUCGACGA-CGCCGCu-- -3'
miRNA:   3'- -UUGCca-CGCGGCUGCUcGCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 66824 0.67 0.687193
Target:  5'- --aGG-GCGcCCGGCGcgacuccgGGCGCCGcCGUCg -3'
miRNA:   3'- uugCCaCGC-GGCUGC--------UCGCGGC-GUAG- -5'
10852 3' -60.8 NC_002794.1 + 110533 0.67 0.687193
Target:  5'- uGCGGgagaacGCGgCGACGAcguGCuCCGCGUCg -3'
miRNA:   3'- uUGCCa-----CGCgGCUGCU---CGcGGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.