miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 10647 0.66 0.71518
Target:  5'- gAGCGGcGCGagcCCGACGAGCgucuggaGCCGCc-- -3'
miRNA:   3'- -UUGCCaCGC---GGCUGCUCG-------CGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 11646 0.66 0.716137
Target:  5'- cGACGG-GCgGCCGACGAcGCGgcCCGCc-- -3'
miRNA:   3'- -UUGCCaCG-CGGCUGCU-CGC--GGCGuag -5'
10852 3' -60.8 NC_002794.1 + 12227 0.72 0.381709
Target:  5'- -uCGGcgGCGCCGGCG-GCGCCGuCcgCg -3'
miRNA:   3'- uuGCCa-CGCGGCUGCuCGCGGC-GuaG- -5'
10852 3' -60.8 NC_002794.1 + 12417 0.7 0.484565
Target:  5'- gGACGGcgcGCGCCGACuGGCagcugucCCGCGUCa -3'
miRNA:   3'- -UUGCCa--CGCGGCUGcUCGc------GGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 13108 0.69 0.56963
Target:  5'- --aGGUGCGuUCGGCGGGguCGCCGCGc- -3'
miRNA:   3'- uugCCACGC-GGCUGCUC--GCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 14455 0.67 0.696894
Target:  5'- cGCGG-GCGaCCGugucgaGCGGcGCGCCGCGcUCg -3'
miRNA:   3'- uUGCCaCGC-GGC------UGCU-CGCGGCGU-AG- -5'
10852 3' -60.8 NC_002794.1 + 14500 0.66 0.753761
Target:  5'- cGGCGGcccGCGCucgCGGCGcucguGGCGCCGC-UCg -3'
miRNA:   3'- -UUGCCa--CGCG---GCUGC-----UCGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 14644 0.67 0.696894
Target:  5'- cACGGaGaCGCCGGCGc-CGCgGCGUCg -3'
miRNA:   3'- uUGCCaC-GCGGCUGCucGCGgCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 14684 0.67 0.684275
Target:  5'- cGGCGGUcGCGCUgcuccugacggcguGGgGAGCGCUGC-UCg -3'
miRNA:   3'- -UUGCCA-CGCGG--------------CUgCUCGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 19523 0.68 0.608711
Target:  5'- -uCGGaGCGCCGGCGcGGCGCgGCc-- -3'
miRNA:   3'- uuGCCaCGCGGCUGC-UCGCGgCGuag -5'
10852 3' -60.8 NC_002794.1 + 20529 0.67 0.706545
Target:  5'- cAACGGacugGCGUucgcgaCGACGGGCGaCCGgAUCc -3'
miRNA:   3'- -UUGCCa---CGCG------GCUGCUCGC-GGCgUAG- -5'
10852 3' -60.8 NC_002794.1 + 21693 0.68 0.606748
Target:  5'- -cCGGcuccccgccucgGCGUCcACGGGCGCUGCGUCg -3'
miRNA:   3'- uuGCCa-----------CGCGGcUGCUCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 24077 0.69 0.559947
Target:  5'- ---cGUGCGCCcgGGCGGGCGUCGCcgUa -3'
miRNA:   3'- uugcCACGCGG--CUGCUCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 26086 0.66 0.744483
Target:  5'- cGCGGggcaGCGCCGACGgccccGGCGaUCGCcgUg -3'
miRNA:   3'- uUGCCa---CGCGGCUGC-----UCGC-GGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 31528 0.66 0.735114
Target:  5'- -cCGGuUGCG-CGGCGAGCcCCGaCGUCu -3'
miRNA:   3'- uuGCC-ACGCgGCUGCUCGcGGC-GUAG- -5'
10852 3' -60.8 NC_002794.1 + 31898 0.71 0.47547
Target:  5'- cAGCGGcGCgucGCUGAUGAGCGCCGaCAg- -3'
miRNA:   3'- -UUGCCaCG---CGGCUGCUCGCGGC-GUag -5'
10852 3' -60.8 NC_002794.1 + 32871 0.69 0.540725
Target:  5'- cGGCGGgcgGCGgCGGCG-GCGgCgGCAUCa -3'
miRNA:   3'- -UUGCCa--CGCgGCUGCuCGC-GgCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 34858 0.82 0.099391
Target:  5'- gAGCGG-GCGCCG-CGGGCGCCGCGg- -3'
miRNA:   3'- -UUGCCaCGCGGCuGCUCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 37271 0.68 0.628374
Target:  5'- cGGCGG-GCGC--GCGGGCGCgGCGUa -3'
miRNA:   3'- -UUGCCaCGCGgcUGCUCGCGgCGUAg -5'
10852 3' -60.8 NC_002794.1 + 37757 0.77 0.213263
Target:  5'- cGCGGcgGCGCCGGCGGGagcgGCCGuCGUCg -3'
miRNA:   3'- uUGCCa-CGCGGCUGCUCg---CGGC-GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.