miRNA display CGI


Results 21 - 40 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 38498 0.66 0.725662
Target:  5'- cGCGGcgGCGCCGGuCGc-CGCCGCcUCc -3'
miRNA:   3'- uUGCCa-CGCGGCU-GCucGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 38688 0.69 0.540725
Target:  5'- gGACGGggucaccgccGCGCCGuCGAGCGCCccgGCcgCc -3'
miRNA:   3'- -UUGCCa---------CGCGGCuGCUCGCGG---CGuaG- -5'
10852 3' -60.8 NC_002794.1 + 40338 0.69 0.540725
Target:  5'- cGCGGacGCGCCaccGGCG-GCGCCGCcUCu -3'
miRNA:   3'- uUGCCa-CGCGG---CUGCuCGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 41288 0.69 0.56963
Target:  5'- cGGCGGcgGCuCCGACGcGgGCCGCGUg -3'
miRNA:   3'- -UUGCCa-CGcGGCUGCuCgCGGCGUAg -5'
10852 3' -60.8 NC_002794.1 + 42651 0.68 0.638213
Target:  5'- cGCGGccgaaGCCGACG-GCGCCGCc-- -3'
miRNA:   3'- uUGCCacg--CGGCUGCuCGCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 44099 1.07 0.001747
Target:  5'- uAACGGUGCGCCGACGAGCGCCGCAUCa -3'
miRNA:   3'- -UUGCCACGCGGCUGCUCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 44310 0.69 0.56963
Target:  5'- aGGCGGggaGCGaCCG-CGAGCGCgGCGg- -3'
miRNA:   3'- -UUGCCa--CGC-GGCuGCUCGCGgCGUag -5'
10852 3' -60.8 NC_002794.1 + 44719 0.66 0.716137
Target:  5'- cGCGGcGaCGUCGGCcGGCGCCGCc-- -3'
miRNA:   3'- uUGCCaC-GCGGCUGcUCGCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 46313 0.66 0.725662
Target:  5'- gAGCGcG-GCGgCGACG-GCGCCGUcgCc -3'
miRNA:   3'- -UUGC-CaCGCgGCUGCuCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 47951 0.69 0.56963
Target:  5'- cGCGcGUcccgGCGCCGGCuGGGCGaCCGCcgCg -3'
miRNA:   3'- uUGC-CA----CGCGGCUG-CUCGC-GGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 48577 0.68 0.638213
Target:  5'- aGAUGG-GCgaGCCGGagGAGCGgCGCGUCg -3'
miRNA:   3'- -UUGCCaCG--CGGCUg-CUCGCgGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 48631 0.68 0.648047
Target:  5'- gAGCGGccgucgGgGCCcGCGAGcCGCCGCAg- -3'
miRNA:   3'- -UUGCCa-----CgCGGcUGCUC-GCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 49235 0.66 0.735114
Target:  5'- cAACaGG-GcCGUCGACGGGCGcCCGCGc- -3'
miRNA:   3'- -UUG-CCaC-GCGGCUGCUCGC-GGCGUag -5'
10852 3' -60.8 NC_002794.1 + 49268 0.69 0.589113
Target:  5'- cGACGG-GCGCuccaaCGGCccGGGCGCCGCcgCc -3'
miRNA:   3'- -UUGCCaCGCG-----GCUG--CUCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 49448 0.66 0.753761
Target:  5'- cGCGGU-CGUCGcCGuGGCGCCGCcgUg -3'
miRNA:   3'- uUGCCAcGCGGCuGC-UCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 49612 0.71 0.439982
Target:  5'- cGGCGG-GCGCCGGCG-GCGCCuCGc- -3'
miRNA:   3'- -UUGCCaCGCGGCUGCuCGCGGcGUag -5'
10852 3' -60.8 NC_002794.1 + 49860 0.66 0.753761
Target:  5'- -uCGGcgGCGCCcgccacccggacGugGAGCGcCCGCAg- -3'
miRNA:   3'- uuGCCa-CGCGG------------CugCUCGC-GGCGUag -5'
10852 3' -60.8 NC_002794.1 + 52886 0.66 0.753761
Target:  5'- cGAUGGUgGgGUCGaACGcGGCGCCGCcgCc -3'
miRNA:   3'- -UUGCCA-CgCGGC-UGC-UCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 53299 0.66 0.716137
Target:  5'- --aGGUGCcgagcgGUCGGCcGGCGCCGCGa- -3'
miRNA:   3'- uugCCACG------CGGCUGcUCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 53662 0.7 0.509521
Target:  5'- aAACGGUGCuccaggacggauccGuCCGucaaACgGAGCGCCGCGUCc -3'
miRNA:   3'- -UUGCCACG--------------C-GGC----UG-CUCGCGGCGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.