miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10852 3' -60.8 NC_002794.1 + 195629 0.68 0.598901
Target:  5'- aAACGGccgGCGaCGACGAGCcGCaCGCAcUCg -3'
miRNA:   3'- -UUGCCa--CGCgGCUGCUCG-CG-GCGU-AG- -5'
10852 3' -60.8 NC_002794.1 + 193280 0.66 0.716137
Target:  5'- cAGCGGcgUGCGCCGGuagucgccgucCGcuccGCGCCGCAc- -3'
miRNA:   3'- -UUGCC--ACGCGGCU-----------GCu---CGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 190435 0.67 0.706545
Target:  5'- cAGCaGGUGCGacaCGAaauaCGuGCGCgGCGUCg -3'
miRNA:   3'- -UUG-CCACGCg--GCU----GCuCGCGgCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 188785 0.69 0.540725
Target:  5'- cAGCGGUaGCgGCCGGCcccgccGAGCGCCGUc-- -3'
miRNA:   3'- -UUGCCA-CG-CGGCUG------CUCGCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 187902 0.67 0.677451
Target:  5'- cGCGGUGCcgcucgcccGCCGggccccgccGCGAcCGUCGCGUCa -3'
miRNA:   3'- uUGCCACG---------CGGC---------UGCUcGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 186830 0.68 0.608711
Target:  5'- gAACGGgaagGCGCCcgacagcgcGCGGGCGCUGCcgUg -3'
miRNA:   3'- -UUGCCa---CGCGGc--------UGCUCGCGGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 185104 0.66 0.719955
Target:  5'- -cCGGUcguguuguacagcauGUGCaCGACcaggcGGCGCCGCGUCg -3'
miRNA:   3'- uuGCCA---------------CGCG-GCUGc----UCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 184622 0.68 0.598901
Target:  5'- cAGCGGcaGCGUCcACGAucgGCGUCGCGUCg -3'
miRNA:   3'- -UUGCCa-CGCGGcUGCU---CGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 183668 0.68 0.598901
Target:  5'- -cCGGgcccgaGCGCCGAcggguCGAGCGcCCGCcgCg -3'
miRNA:   3'- uuGCCa-----CGCGGCU-----GCUCGC-GGCGuaG- -5'
10852 3' -60.8 NC_002794.1 + 182190 0.68 0.618538
Target:  5'- uAACGGggccucgGCGCCGGCGucGCGCCaCGg- -3'
miRNA:   3'- -UUGCCa------CGCGGCUGCu-CGCGGcGUag -5'
10852 3' -60.8 NC_002794.1 + 181747 0.69 0.549349
Target:  5'- gAGCGGccggccagcccgcUGaCGCCGAUG-GCGCCGCGc- -3'
miRNA:   3'- -UUGCC-------------AC-GCGGCUGCuCGCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 179239 0.66 0.716137
Target:  5'- cAACaGGUcgGCGUCGGCGAGacCGCCGCc-- -3'
miRNA:   3'- -UUG-CCA--CGCGGCUGCUC--GCGGCGuag -5'
10852 3' -60.8 NC_002794.1 + 177342 0.73 0.373813
Target:  5'- gAGCGGUGgGCuCGACGAuaGCGCuCGC-UCg -3'
miRNA:   3'- -UUGCCACgCG-GCUGCU--CGCG-GCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 152980 0.67 0.65787
Target:  5'- gGGCGcuuCGCCGACaGGCGUCGUAUCu -3'
miRNA:   3'- -UUGCcacGCGGCUGcUCGCGGCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 151584 0.66 0.725662
Target:  5'- cGGCGGcgcGCGCCGccgccGCGGGC-CCGCGg- -3'
miRNA:   3'- -UUGCCa--CGCGGC-----UGCUCGcGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 150096 0.68 0.648047
Target:  5'- gGGCGGaGCGUgaGGCcgGAGCGCCGC-UCg -3'
miRNA:   3'- -UUGCCaCGCGg-CUG--CUCGCGGCGuAG- -5'
10852 3' -60.8 NC_002794.1 + 149650 0.68 0.608711
Target:  5'- uGCGGUuCGCCGAggaggcCGAGCGggggCGCGUCg -3'
miRNA:   3'- uUGCCAcGCGGCU------GCUCGCg---GCGUAG- -5'
10852 3' -60.8 NC_002794.1 + 145842 0.68 0.648047
Target:  5'- cGACGGUcGCcacgcucgacgaGCCGcCGAGgGCCGCGa- -3'
miRNA:   3'- -UUGCCA-CG------------CGGCuGCUCgCGGCGUag -5'
10852 3' -60.8 NC_002794.1 + 145717 0.7 0.512328
Target:  5'- aAACGGggaucggGCGCUggaGGCGgcGGCGCCgGCAUCg -3'
miRNA:   3'- -UUGCCa------CGCGG---CUGC--UCGCGG-CGUAG- -5'
10852 3' -60.8 NC_002794.1 + 145564 0.71 0.431347
Target:  5'- -cCGGUuCGCgGACGAGCGCCGaCGg- -3'
miRNA:   3'- uuGCCAcGCGgCUGCUCGCGGC-GUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.