miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 3' -57.7 NC_002794.1 + 151584 0.66 0.896129
Target:  5'- cGGcGGCGCGCgCcgCCgcCGCGGgCCCGCg -3'
miRNA:   3'- -UCaCCGUGUG-Ga-GGa-GUGUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 8122 0.66 0.896129
Target:  5'- gGGcGGCG-GCCUCCUCGguGaCCgGCg -3'
miRNA:   3'- -UCaCCGUgUGGAGGAGUguCaGGgCG- -5'
10853 3' -57.7 NC_002794.1 + 126438 0.66 0.896129
Target:  5'- aGGUGuGgGCGCCUCggccCugGGUCCgGCu -3'
miRNA:   3'- -UCAC-CgUGUGGAGga--GugUCAGGgCG- -5'
10853 3' -57.7 NC_002794.1 + 36203 0.66 0.896129
Target:  5'- cGUGGCACACggCCaccaGCAGguagCCGCa -3'
miRNA:   3'- uCACCGUGUGgaGGag--UGUCag--GGCG- -5'
10853 3' -57.7 NC_002794.1 + 71939 0.66 0.88965
Target:  5'- aGGUcGCGCAgCUCCUCGCcgacGUaCCgGCg -3'
miRNA:   3'- -UCAcCGUGUgGAGGAGUGu---CA-GGgCG- -5'
10853 3' -57.7 NC_002794.1 + 19275 0.66 0.88965
Target:  5'- cGUGGCGCGUCUCCUgGCcuggAGcCUCGUc -3'
miRNA:   3'- uCACCGUGUGGAGGAgUG----UCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 48348 0.66 0.88965
Target:  5'- cGGUGGUACGCCUgCUcCGCGaccagCCGCc -3'
miRNA:   3'- -UCACCGUGUGGAgGA-GUGUcag--GGCG- -5'
10853 3' -57.7 NC_002794.1 + 74503 0.66 0.88965
Target:  5'- --cGGCAC-CUUCC-CGCAG-CUCGCc -3'
miRNA:   3'- ucaCCGUGuGGAGGaGUGUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 41365 0.66 0.88899
Target:  5'- cGUcGGCcuucgcgcucgcgGCGCCUCCUUcgGCGGcCCCGa -3'
miRNA:   3'- uCA-CCG-------------UGUGGAGGAG--UGUCaGGGCg -5'
10853 3' -57.7 NC_002794.1 + 49788 0.66 0.882956
Target:  5'- cGGUugGGCACgaGCCgagCCaggaGCAGcUCCCGCg -3'
miRNA:   3'- -UCA--CCGUG--UGGa--GGag--UGUC-AGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 33417 0.66 0.882956
Target:  5'- -cUGGCGCACgacCCUCGggcUGGUCCCGg -3'
miRNA:   3'- ucACCGUGUGga-GGAGU---GUCAGGGCg -5'
10853 3' -57.7 NC_002794.1 + 75072 0.66 0.882956
Target:  5'- cGUcGGCACACCgcacaaccgUCCcaggUCGCGGaCUCGCg -3'
miRNA:   3'- uCA-CCGUGUGG---------AGG----AGUGUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 631 0.66 0.882956
Target:  5'- uGUGGCGuuCGCCUCCcguccccgccgCGCAgcgcGUCUCGCc -3'
miRNA:   3'- uCACCGU--GUGGAGGa----------GUGU----CAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 186659 0.66 0.882956
Target:  5'- --cGcGCGCACC-CCguaCACGGcgCCCGCc -3'
miRNA:   3'- ucaC-CGUGUGGaGGa--GUGUCa-GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 180259 0.66 0.876051
Target:  5'- cGUGuuguccGCuuCGCCggucUCCUCGCGG-CCCGCg -3'
miRNA:   3'- uCAC------CGu-GUGG----AGGAGUGUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 131381 0.66 0.876051
Target:  5'- cGUGGUcgGCGCCgcgCCcgucaUCACGGcCUCGCc -3'
miRNA:   3'- uCACCG--UGUGGa--GG-----AGUGUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 47526 0.66 0.876051
Target:  5'- --cGGCACcgGCUgcCCUCGCcGaUCCCGCa -3'
miRNA:   3'- ucaCCGUG--UGGa-GGAGUGuC-AGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 115308 0.66 0.868939
Target:  5'- -cUGcGC-CGCCgUCCgCACGGUCgCCGCg -3'
miRNA:   3'- ucAC-CGuGUGG-AGGaGUGUCAG-GGCG- -5'
10853 3' -57.7 NC_002794.1 + 79301 0.66 0.868939
Target:  5'- cGUGGCcgaGCGCCUCgauCUCACGG-CCUa- -3'
miRNA:   3'- uCACCG---UGUGGAG---GAGUGUCaGGGcg -5'
10853 3' -57.7 NC_002794.1 + 17520 0.66 0.868939
Target:  5'- --cGGCGC-CCUCCUgGaagaGGUCCUGa -3'
miRNA:   3'- ucaCCGUGuGGAGGAgUg---UCAGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.