miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 3' -57.7 NC_002794.1 + 43833 1.11 0.001875
Target:  5'- gAGUGGCACACCUCCUCACAGUCCCGCu -3'
miRNA:   3'- -UCACCGUGUGGAGGAGUGUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 32168 0.76 0.375464
Target:  5'- cGGUGGCcCGCCUggCC-C-CGGUCCCGCa -3'
miRNA:   3'- -UCACCGuGUGGA--GGaGuGUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 71889 0.75 0.433916
Target:  5'- cGUGGaCGCGCU--CUCGCAGcUCCCGCa -3'
miRNA:   3'- uCACC-GUGUGGagGAGUGUC-AGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 93478 0.74 0.44269
Target:  5'- cGUGGC-CACCUUCUCGCGGgagUCGCu -3'
miRNA:   3'- uCACCGuGUGGAGGAGUGUCag-GGCG- -5'
10853 3' -57.7 NC_002794.1 + 192441 0.73 0.497315
Target:  5'- --cGGCGCGUCgcgcgCCUCGCAGUCgCGCg -3'
miRNA:   3'- ucaCCGUGUGGa----GGAGUGUCAGgGCG- -5'
10853 3' -57.7 NC_002794.1 + 113052 0.73 0.525744
Target:  5'- --aGGCGCGCCUCga---GGUCCCGCa -3'
miRNA:   3'- ucaCCGUGUGGAGgagugUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 187029 0.72 0.564546
Target:  5'- gGGUGccgaUACACCggCUCGCAGUCCCGg -3'
miRNA:   3'- -UCACc---GUGUGGagGAGUGUCAGGGCg -5'
10853 3' -57.7 NC_002794.1 + 1117 0.72 0.574372
Target:  5'- cGUGGUACAgUCUCCUCcccuucaGGUCCaCGCg -3'
miRNA:   3'- uCACCGUGU-GGAGGAGug-----UCAGG-GCG- -5'
10853 3' -57.7 NC_002794.1 + 58706 0.72 0.584237
Target:  5'- gGGcUGGUGCGCUUCCUgCACcgcGUCUCGCg -3'
miRNA:   3'- -UC-ACCGUGUGGAGGA-GUGu--CAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 81940 0.71 0.632926
Target:  5'- cGGU-GCACAUCUCCugcgccaUCGCGGcgCCCGCc -3'
miRNA:   3'- -UCAcCGUGUGGAGG-------AGUGUCa-GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 167736 0.71 0.633923
Target:  5'- --aGGCACgauGCUgCCUCGCGGUCCgGUg -3'
miRNA:   3'- ucaCCGUG---UGGaGGAGUGUCAGGgCG- -5'
10853 3' -57.7 NC_002794.1 + 47893 0.71 0.643884
Target:  5'- --aGGCuCAgCUCg-CGCGGUCCCGCa -3'
miRNA:   3'- ucaCCGuGUgGAGgaGUGUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 82884 0.7 0.660794
Target:  5'- cGUGcGCGCcucgcguccgccucGCCguccgCCUCGCGGcCCCGCc -3'
miRNA:   3'- uCAC-CGUG--------------UGGa----GGAGUGUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 143184 0.7 0.663773
Target:  5'- --cGGCgguucucgacguGCAgCUUCUCGCGGUCCCaGCg -3'
miRNA:   3'- ucaCCG------------UGUgGAGGAGUGUCAGGG-CG- -5'
10853 3' -57.7 NC_002794.1 + 49289 0.7 0.663773
Target:  5'- --gGGCGcCGCCgCCUCcCcGUCCCGCa -3'
miRNA:   3'- ucaCCGU-GUGGaGGAGuGuCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 181243 0.7 0.663773
Target:  5'- --cGGCGCGCCUUCcacCGCGcGUgCCCGCg -3'
miRNA:   3'- ucaCCGUGUGGAGGa--GUGU-CA-GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 188896 0.7 0.673685
Target:  5'- cAGUGGCGgGCCagCUCGguCAG-CCCGUa -3'
miRNA:   3'- -UCACCGUgUGGagGAGU--GUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 145280 0.7 0.683565
Target:  5'- cGUGGCAgGCCUgaCCUCGac--CCCGCu -3'
miRNA:   3'- uCACCGUgUGGA--GGAGUgucaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 101127 0.7 0.683565
Target:  5'- cGUGGCGCGCCUggCC-CGCAucUCCCuGCg -3'
miRNA:   3'- uCACCGUGUGGA--GGaGUGUc-AGGG-CG- -5'
10853 3' -57.7 NC_002794.1 + 145395 0.7 0.693404
Target:  5'- cGGUGGCGCGCCgcgcggCCUuaaagCGCGGcgCgCCGCc -3'
miRNA:   3'- -UCACCGUGUGGa-----GGA-----GUGUCa-G-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.