miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 3' -57.7 NC_002794.1 + 115308 0.66 0.868939
Target:  5'- -cUGcGC-CGCCgUCCgCACGGUCgCCGCg -3'
miRNA:   3'- ucAC-CGuGUGG-AGGaGUGUCAG-GGCG- -5'
10853 3' -57.7 NC_002794.1 + 68957 0.66 0.868939
Target:  5'- --cGGCGCcucucCCUCCUCcGCGGg-CCGCg -3'
miRNA:   3'- ucaCCGUGu----GGAGGAG-UGUCagGGCG- -5'
10853 3' -57.7 NC_002794.1 + 79827 0.66 0.868217
Target:  5'- gAGUGGCGCcaggugacGCCgagaucgacaaauUCCgcgaAgAGUCCCGCu -3'
miRNA:   3'- -UCACCGUG--------UGG-------------AGGag--UgUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 77714 0.67 0.864575
Target:  5'- --cGGC-CugCUCCUCAacccucucaucuggcCGG-CCCGCa -3'
miRNA:   3'- ucaCCGuGugGAGGAGU---------------GUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 112703 0.67 0.861626
Target:  5'- --cGGC-CAgCUUCUCGCGGgucugCCCGUc -3'
miRNA:   3'- ucaCCGuGUgGAGGAGUGUCa----GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 65270 0.67 0.861626
Target:  5'- gAGcGGCgGCGCCUCCUCGCcc-CCCucgGCg -3'
miRNA:   3'- -UCaCCG-UGUGGAGGAGUGucaGGG---CG- -5'
10853 3' -57.7 NC_002794.1 + 193377 0.67 0.861626
Target:  5'- --gGGC-CGCgCUCCUCGCcGUCguCCGCc -3'
miRNA:   3'- ucaCCGuGUG-GAGGAGUGuCAG--GGCG- -5'
10853 3' -57.7 NC_002794.1 + 117368 0.67 0.861626
Target:  5'- gAGcGGCGgGCCgCCUgCACGGUCgCgGCg -3'
miRNA:   3'- -UCaCCGUgUGGaGGA-GUGUCAG-GgCG- -5'
10853 3' -57.7 NC_002794.1 + 59319 0.67 0.854117
Target:  5'- --cGGCGCGCCcgaCUUCGCcG-CCCGCc -3'
miRNA:   3'- ucaCCGUGUGGa--GGAGUGuCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 50791 0.67 0.854117
Target:  5'- --gGGCgGCGCCUCCUCGC---CCgGCg -3'
miRNA:   3'- ucaCCG-UGUGGAGGAGUGucaGGgCG- -5'
10853 3' -57.7 NC_002794.1 + 73077 0.67 0.853355
Target:  5'- gAGgacgGGCGCACCgucaagaUCUUC-CAGgugcCCCGCu -3'
miRNA:   3'- -UCa---CCGUGUGG-------AGGAGuGUCa---GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 79600 0.67 0.846417
Target:  5'- aAG-GGCuGCugCUCCUCACcauGUCCUa- -3'
miRNA:   3'- -UCaCCG-UGugGAGGAGUGu--CAGGGcg -5'
10853 3' -57.7 NC_002794.1 + 14471 0.67 0.846417
Target:  5'- gAGcGGCGCGCCgCgCUCGCuGUucgcggcggcggCCCGCg -3'
miRNA:   3'- -UCaCCGUGUGGaG-GAGUGuCA------------GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 13348 0.67 0.838533
Target:  5'- gGGUGGCgGCGCC-CCUCGCccGGgCCCu- -3'
miRNA:   3'- -UCACCG-UGUGGaGGAGUG--UCaGGGcg -5'
10853 3' -57.7 NC_002794.1 + 59890 0.67 0.838533
Target:  5'- --cGGCGCACCUgcgCCgcgugCGCAGcgacaugggcgCCCGCg -3'
miRNA:   3'- ucaCCGUGUGGA---GGa----GUGUCa----------GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 150499 0.67 0.825552
Target:  5'- --cGGCGcCGCCUCCUCccccucccccuccuCGGcCCCGUa -3'
miRNA:   3'- ucaCCGU-GUGGAGGAGu-------------GUCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 68828 0.67 0.822238
Target:  5'- --cGGCgACGCCgccggCgCUCGCGGUCCC-Cg -3'
miRNA:   3'- ucaCCG-UGUGGa----G-GAGUGUCAGGGcG- -5'
10853 3' -57.7 NC_002794.1 + 77023 0.68 0.805289
Target:  5'- --cGGCGCACCUCgacCGCucGUCcCCGCu -3'
miRNA:   3'- ucaCCGUGUGGAGga-GUGu-CAG-GGCG- -5'
10853 3' -57.7 NC_002794.1 + 40835 0.68 0.805289
Target:  5'- --cGGUGCGCCUgccgaCCUCGCGcUCCCaGCg -3'
miRNA:   3'- ucaCCGUGUGGA-----GGAGUGUcAGGG-CG- -5'
10853 3' -57.7 NC_002794.1 + 34387 0.68 0.80356
Target:  5'- cGGUGGCcaACAgcuUCUUCUCGCAGUacgugcccgacaCCGCg -3'
miRNA:   3'- -UCACCG--UGU---GGAGGAGUGUCAg-----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.