miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 3' -57.7 NC_002794.1 + 631 0.66 0.882956
Target:  5'- uGUGGCGuuCGCCUCCcguccccgccgCGCAgcgcGUCUCGCc -3'
miRNA:   3'- uCACCGU--GUGGAGGa----------GUGU----CAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 1117 0.72 0.574372
Target:  5'- cGUGGUACAgUCUCCUCcccuucaGGUCCaCGCg -3'
miRNA:   3'- uCACCGUGU-GGAGGAGug-----UCAGG-GCG- -5'
10853 3' -57.7 NC_002794.1 + 8122 0.66 0.896129
Target:  5'- gGGcGGCG-GCCUCCUCGguGaCCgGCg -3'
miRNA:   3'- -UCaCCGUgUGGAGGAGUguCaGGgCG- -5'
10853 3' -57.7 NC_002794.1 + 13348 0.67 0.838533
Target:  5'- gGGUGGCgGCGCC-CCUCGCccGGgCCCu- -3'
miRNA:   3'- -UCACCG-UGUGGaGGAGUG--UCaGGGcg -5'
10853 3' -57.7 NC_002794.1 + 14471 0.67 0.846417
Target:  5'- gAGcGGCGCGCCgCgCUCGCuGUucgcggcggcggCCCGCg -3'
miRNA:   3'- -UCaCCGUGUGGaG-GAGUGuCA------------GGGCG- -5'
10853 3' -57.7 NC_002794.1 + 14992 0.69 0.760454
Target:  5'- --cGGCAgCAgCUCCUCggGCGGUCUCGg -3'
miRNA:   3'- ucaCCGU-GUgGAGGAG--UGUCAGGGCg -5'
10853 3' -57.7 NC_002794.1 + 17520 0.66 0.868939
Target:  5'- --cGGCGC-CCUCCUgGaagaGGUCCUGa -3'
miRNA:   3'- ucaCCGUGuGGAGGAgUg---UCAGGGCg -5'
10853 3' -57.7 NC_002794.1 + 19275 0.66 0.88965
Target:  5'- cGUGGCGCGUCUCCUgGCcuggAGcCUCGUc -3'
miRNA:   3'- uCACCGUGUGGAGGAgUG----UCaGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 32168 0.76 0.375464
Target:  5'- cGGUGGCcCGCCUggCC-C-CGGUCCCGCa -3'
miRNA:   3'- -UCACCGuGUGGA--GGaGuGUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 33417 0.66 0.882956
Target:  5'- -cUGGCGCACgacCCUCGggcUGGUCCCGg -3'
miRNA:   3'- ucACCGUGUGga-GGAGU---GUCAGGGCg -5'
10853 3' -57.7 NC_002794.1 + 34387 0.68 0.80356
Target:  5'- cGGUGGCcaACAgcuUCUUCUCGCAGUacgugcccgacaCCGCg -3'
miRNA:   3'- -UCACCG--UGU---GGAGGAGUGUCAg-----------GGCG- -5'
10853 3' -57.7 NC_002794.1 + 36203 0.66 0.896129
Target:  5'- cGUGGCACACggCCaccaGCAGguagCCGCa -3'
miRNA:   3'- uCACCGUGUGgaGGag--UGUCag--GGCG- -5'
10853 3' -57.7 NC_002794.1 + 40835 0.68 0.805289
Target:  5'- --cGGUGCGCCUgccgaCCUCGCGcUCCCaGCg -3'
miRNA:   3'- ucaCCGUGUGGA-----GGAGUGUcAGGG-CG- -5'
10853 3' -57.7 NC_002794.1 + 41365 0.66 0.88899
Target:  5'- cGUcGGCcuucgcgcucgcgGCGCCUCCUUcgGCGGcCCCGa -3'
miRNA:   3'- uCA-CCG-------------UGUGGAGGAG--UGUCaGGGCg -5'
10853 3' -57.7 NC_002794.1 + 43833 1.11 0.001875
Target:  5'- gAGUGGCACACCUCCUCACAGUCCCGCu -3'
miRNA:   3'- -UCACCGUGUGGAGGAGUGUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 47526 0.66 0.876051
Target:  5'- --cGGCACcgGCUgcCCUCGCcGaUCCCGCa -3'
miRNA:   3'- ucaCCGUG--UGGa-GGAGUGuC-AGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 47893 0.71 0.643884
Target:  5'- --aGGCuCAgCUCg-CGCGGUCCCGCa -3'
miRNA:   3'- ucaCCGuGUgGAGgaGUGUCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 48348 0.66 0.88965
Target:  5'- cGGUGGUACGCCUgCUcCGCGaccagCCGCc -3'
miRNA:   3'- -UCACCGUGUGGAgGA-GUGUcag--GGCG- -5'
10853 3' -57.7 NC_002794.1 + 49289 0.7 0.663773
Target:  5'- --gGGCGcCGCCgCCUCcCcGUCCCGCa -3'
miRNA:   3'- ucaCCGU-GUGGaGGAGuGuCAGGGCG- -5'
10853 3' -57.7 NC_002794.1 + 49788 0.66 0.882956
Target:  5'- cGGUugGGCACgaGCCgagCCaggaGCAGcUCCCGCg -3'
miRNA:   3'- -UCA--CCGUG--UGGa--GGag--UGUC-AGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.