miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 5' -54.3 NC_002794.1 + 50781 0.66 0.983023
Target:  5'- gGCGCGUcucGGGCGGcgccuccucGCCCGGCg -3'
miRNA:   3'- -CGUGCA---UCUGCCacucua---UGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 93011 0.66 0.982449
Target:  5'- cGCgACGUGGugcagcggcggaaccCGGUGcgcGGcUGCCUGGCCu -3'
miRNA:   3'- -CG-UGCAUCu--------------GCCAC---UCuAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 143550 0.66 0.982255
Target:  5'- gGCACG-AGcACGGUG----GCCCaGCCg -3'
miRNA:   3'- -CGUGCaUC-UGCCACucuaUGGGcCGG- -5'
10853 5' -54.3 NC_002794.1 + 37755 0.66 0.982255
Target:  5'- gGCGCGgcggcgccGGCGG-GAGcgGCCgucgucguCGGCCg -3'
miRNA:   3'- -CGUGCau------CUGCCaCUCuaUGG--------GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 112154 0.66 0.982255
Target:  5'- aCGCGUAGACcccgacGAGGcucUGCgCGGCCa -3'
miRNA:   3'- cGUGCAUCUGcca---CUCU---AUGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 112436 0.66 0.982255
Target:  5'- aCGCGaAGACccgGAGAU-CCCGGCg -3'
miRNA:   3'- cGUGCaUCUGccaCUCUAuGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 147127 0.66 0.98022
Target:  5'- -gACGUcgacGGCGGUucGAGAcgGCCCcggGGCCg -3'
miRNA:   3'- cgUGCAu---CUGCCA--CUCUa-UGGG---CCGG- -5'
10853 5' -54.3 NC_002794.1 + 154325 0.66 0.98022
Target:  5'- -aGCGgcGuCGGUcgucccGGGUGCCgCGGCCg -3'
miRNA:   3'- cgUGCauCuGCCAc-----UCUAUGG-GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 153537 0.66 0.98022
Target:  5'- -gAgGUGGGCGGcuGGAUGCCCcacGGCg -3'
miRNA:   3'- cgUgCAUCUGCCacUCUAUGGG---CCGg -5'
10853 5' -54.3 NC_002794.1 + 186343 0.66 0.98022
Target:  5'- -gACGgcGGCGGcGAcGUGCCCGaccaGCCg -3'
miRNA:   3'- cgUGCauCUGCCaCUcUAUGGGC----CGG- -5'
10853 5' -54.3 NC_002794.1 + 192903 0.66 0.98022
Target:  5'- aGCACGUccgcGaACGGUcgcgaguccaucGAGAUGaaCGGCCa -3'
miRNA:   3'- -CGUGCAu---C-UGCCA------------CUCUAUggGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 153339 0.66 0.978016
Target:  5'- -aACGgcGACGcGUGuugucaGGAcgcgGCCCGGCUg -3'
miRNA:   3'- cgUGCauCUGC-CAC------UCUa---UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 104238 0.66 0.978016
Target:  5'- cGCACG-AGAUGGagaucuUGAGcUcgggcagccGCUCGGCCg -3'
miRNA:   3'- -CGUGCaUCUGCC------ACUCuA---------UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 191155 0.66 0.977786
Target:  5'- aGCAccucguCGUAccACGGcGAGGUcaucgucgcgcucGCCCGGCCg -3'
miRNA:   3'- -CGU------GCAUc-UGCCaCUCUA-------------UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 93899 0.66 0.975637
Target:  5'- --uCGUGGACGGacagGAG-UGCCUaGCCg -3'
miRNA:   3'- cguGCAUCUGCCa---CUCuAUGGGcCGG- -5'
10853 5' -54.3 NC_002794.1 + 55349 0.66 0.975637
Target:  5'- cGCGCccgAGGCGGccGAGGcgGCCgaggCGGCCg -3'
miRNA:   3'- -CGUGca-UCUGCCa-CUCUa-UGG----GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 183590 0.66 0.975637
Target:  5'- aUACGguggGGGCGGaGGGggGCCgcgcgCGGCCg -3'
miRNA:   3'- cGUGCa---UCUGCCaCUCuaUGG-----GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 142477 0.66 0.973074
Target:  5'- gGCAcCGUGGACGcGUGcg--GCgCCGGCa -3'
miRNA:   3'- -CGU-GCAUCUGC-CACucuaUG-GGCCGg -5'
10853 5' -54.3 NC_002794.1 + 125151 0.66 0.972807
Target:  5'- cGUGCGgauGACGGUGcagcucaAGAacuuccACCUGGCCc -3'
miRNA:   3'- -CGUGCau-CUGCCAC-------UCUa-----UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 60519 0.67 0.970321
Target:  5'- gGCACGgagGGGCuGGUgGAGA-AgCCGuGCCa -3'
miRNA:   3'- -CGUGCa--UCUG-CCA-CUCUaUgGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.