miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 5' -54.3 NC_002794.1 + 43869 1.15 0.00283
Target:  5'- gGCACGUAGACGGUGAGAUACCCGGCCg -3'
miRNA:   3'- -CGUGCAUCUGCCACUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 22901 0.75 0.63292
Target:  5'- cGUugGUGGACGGcG-GcgACCgCGGCCg -3'
miRNA:   3'- -CGugCAUCUGCCaCuCuaUGG-GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 47320 0.74 0.692875
Target:  5'- ------cGAgGGUGGGGUGCCCGGCUc -3'
miRNA:   3'- cgugcauCUgCCACUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 82130 0.74 0.712558
Target:  5'- -gGCGUGGGCGucacGUGGGcggacACCCGGCCc -3'
miRNA:   3'- cgUGCAUCUGC----CACUCua---UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 58070 0.73 0.722304
Target:  5'- -gGCGgcGGCGGgacGGGcgGCCCGGCg -3'
miRNA:   3'- cgUGCauCUGCCa--CUCuaUGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 23917 0.73 0.731977
Target:  5'- aGCAgCGUGGGCGaGcGAGcgauccgaGCCCGGCCg -3'
miRNA:   3'- -CGU-GCAUCUGC-CaCUCua------UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 139989 0.73 0.748224
Target:  5'- aGCGCGacgcgGGACGGUGcggguggaggccgcGGAgGCCgCGGCCc -3'
miRNA:   3'- -CGUGCa----UCUGCCAC--------------UCUaUGG-GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 43979 0.73 0.751063
Target:  5'- aGCugGUcguuggagccGGACGuGUGGGAgcacgGCgCGGCCg -3'
miRNA:   3'- -CGugCA----------UCUGC-CACUCUa----UGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 143220 0.72 0.77251
Target:  5'- cGCAgGUggcggaaccacaggaAGACGGUGucgucguggugcaGGAggaagGCCCGGCCc -3'
miRNA:   3'- -CGUgCA---------------UCUGCCAC-------------UCUa----UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 180809 0.72 0.787957
Target:  5'- aGCgACGUcucggacucuGGGCGGgGAGGaGCCCGGCg -3'
miRNA:   3'- -CG-UGCA----------UCUGCCaCUCUaUGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 121744 0.72 0.787957
Target:  5'- aGCACGgcggcgAGACGGagaUGGcGGUGCCCGaggcGCCg -3'
miRNA:   3'- -CGUGCa-----UCUGCC---ACU-CUAUGGGC----CGG- -5'
10853 5' -54.3 NC_002794.1 + 94155 0.72 0.817643
Target:  5'- gGCGC-UGGACGGUGGGGgggacgGggacgaaugugcguuUCCGGCCa -3'
miRNA:   3'- -CGUGcAUCUGCCACUCUa-----U---------------GGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 116622 0.71 0.830982
Target:  5'- uCGCccAGGCGGUaGAGcggcagggGCCCGGCCg -3'
miRNA:   3'- cGUGcaUCUGCCA-CUCua------UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 87078 0.71 0.839095
Target:  5'- aGCACGgugcaggccGGGCGGgugGGGGUGCa-GGCCg -3'
miRNA:   3'- -CGUGCa--------UCUGCCa--CUCUAUGggCCGG- -5'
10853 5' -54.3 NC_002794.1 + 160819 0.71 0.847027
Target:  5'- aGUACGUGGACGGUGcGAa---CGGCg -3'
miRNA:   3'- -CGUGCAUCUGCCACuCUauggGCCGg -5'
10853 5' -54.3 NC_002794.1 + 34749 0.71 0.847027
Target:  5'- cGCGCGacGGcGCGGUGGGAcGCggcaCGGCCg -3'
miRNA:   3'- -CGUGCa-UC-UGCCACUCUaUGg---GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 20602 0.7 0.862321
Target:  5'- cGCucCGUGccCGGcuucGAGAUGCCCGGCUc -3'
miRNA:   3'- -CGu-GCAUcuGCCa---CUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 105880 0.7 0.862321
Target:  5'- aGgACGUGGGgGGUGGGAgaggagucGCCgCGGCg -3'
miRNA:   3'- -CgUGCAUCUgCCACUCUa-------UGG-GCCGg -5'
10853 5' -54.3 NC_002794.1 + 101517 0.7 0.876817
Target:  5'- gGCACac-GcCGGcGGGGUGCCCGGCg -3'
miRNA:   3'- -CGUGcauCuGCCaCUCUAUGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 87283 0.7 0.883751
Target:  5'- gGCGgGUGGG-GGUGGGGaagcgggccUACCCGGUa -3'
miRNA:   3'- -CGUgCAUCUgCCACUCU---------AUGGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.