miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 5' -54.3 NC_002794.1 + 45456 0.67 0.970321
Target:  5'- cGCGCGUcaGCGGgcccaGGGUcccgaGCUCGGCCu -3'
miRNA:   3'- -CGUGCAucUGCCac---UCUA-----UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 145835 0.67 0.970036
Target:  5'- aGCGCGUcGACGGUcgccacgcucgacGAGccGCCgagGGCCg -3'
miRNA:   3'- -CGUGCAuCUGCCA-------------CUCuaUGGg--CCGG- -5'
10853 5' -54.3 NC_002794.1 + 94637 0.67 0.968576
Target:  5'- -aACGccuuGACGGUGGuccauuuguaccgccGGcugUGCCCGGCCu -3'
miRNA:   3'- cgUGCau--CUGCCACU---------------CU---AUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 11251 0.67 0.967373
Target:  5'- uGCACGUAcGAgGGgucGGGcgACgCGGUCa -3'
miRNA:   3'- -CGUGCAU-CUgCCa--CUCuaUGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 129141 0.67 0.967373
Target:  5'- gGCGCGUcgAGACuGUGucGcgGCCCucgcGGCCg -3'
miRNA:   3'- -CGUGCA--UCUGcCACu-CuaUGGG----CCGG- -5'
10853 5' -54.3 NC_002794.1 + 158114 0.67 0.964224
Target:  5'- cGCGcCGUAG-CGG-GAGA--CCCGGUa -3'
miRNA:   3'- -CGU-GCAUCuGCCaCUCUauGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 52957 0.67 0.964224
Target:  5'- aGCAgGUccuCGGccAGGUGCUCGGCCu -3'
miRNA:   3'- -CGUgCAucuGCCacUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 65987 0.67 0.964224
Target:  5'- -aACGUcgaacuGGGCGGUGAu---CCCGGCa -3'
miRNA:   3'- cgUGCA------UCUGCCACUcuauGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 51258 0.67 0.960867
Target:  5'- -gGCGUggGGGCGGgccGGGAggcagGCgCGGCCc -3'
miRNA:   3'- cgUGCA--UCUGCCa--CUCUa----UGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 58650 0.67 0.960867
Target:  5'- aGCugGgcGACGGgcuGcUGCagCCGGCCg -3'
miRNA:   3'- -CGugCauCUGCCacuCuAUG--GGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 120049 0.67 0.960867
Target:  5'- -gACGgcGGCGGUG-GcgGCCgcggaGGCCg -3'
miRNA:   3'- cgUGCauCUGCCACuCuaUGGg----CCGG- -5'
10853 5' -54.3 NC_002794.1 + 106976 0.67 0.95656
Target:  5'- cGCGCGgcggccggcacGGCGGUG-GcgGCgCUGGCCg -3'
miRNA:   3'- -CGUGCau---------CUGCCACuCuaUG-GGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 35670 0.67 0.955055
Target:  5'- -gACGUGGucaacgaggucaucCGGgaaGAG-UGCCCGGCCu -3'
miRNA:   3'- cgUGCAUCu-------------GCCa--CUCuAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 92311 0.67 0.953515
Target:  5'- gGCugGgcgcGGGCGGcGGGG-GCCCGGgCg -3'
miRNA:   3'- -CGugCa---UCUGCCaCUCUaUGGGCCgG- -5'
10853 5' -54.3 NC_002794.1 + 71256 0.67 0.953515
Target:  5'- gGCACGUAGAacuUGAGGUccGCgCGGUCc -3'
miRNA:   3'- -CGUGCAUCUgccACUCUA--UGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 130299 0.67 0.953515
Target:  5'- cCGgGUccGGaACGGcGAGAUGuCCUGGCCg -3'
miRNA:   3'- cGUgCA--UC-UGCCaCUCUAU-GGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 107231 0.67 0.953515
Target:  5'- cGCGCGacggGGGCGGcGucgcggACCUGGCCc -3'
miRNA:   3'- -CGUGCa---UCUGCCaCucua--UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 112320 0.68 0.949512
Target:  5'- -gGCGccGACGGcgGGGAgcGCgCCGGCCg -3'
miRNA:   3'- cgUGCauCUGCCa-CUCUa-UG-GGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 87211 0.68 0.949512
Target:  5'- uGCAgGccGGGCGGgugGGGGUGCa-GGCCg -3'
miRNA:   3'- -CGUgCa-UCUGCCa--CUCUAUGggCCGG- -5'
10853 5' -54.3 NC_002794.1 + 87253 0.68 0.949512
Target:  5'- uGCAgGccGGGCGGgugGGGGUGCa-GGCCg -3'
miRNA:   3'- -CGUgCa-UCUGCCa--CUCUAUGggCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.