miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10853 5' -54.3 NC_002794.1 + 9144 0.69 0.903252
Target:  5'- cGCGCGagAGACuGUGAGugaaCCGGUCg -3'
miRNA:   3'- -CGUGCa-UCUGcCACUCuaugGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 11251 0.67 0.967373
Target:  5'- uGCACGUAcGAgGGgucGGGcgACgCGGUCa -3'
miRNA:   3'- -CGUGCAU-CUgCCa--CUCuaUGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 12719 0.69 0.915135
Target:  5'- uGCGCGUuccGCGGcGAcGAggGCCCGGUCc -3'
miRNA:   3'- -CGUGCAuc-UGCCaCU-CUa-UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 20602 0.7 0.862321
Target:  5'- cGCucCGUGccCGGcuucGAGAUGCCCGGCUc -3'
miRNA:   3'- -CGu-GCAUcuGCCa---CUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 22901 0.75 0.63292
Target:  5'- cGUugGUGGACGGcG-GcgACCgCGGCCg -3'
miRNA:   3'- -CGugCAUCUGCCaCuCuaUGG-GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 23917 0.73 0.731977
Target:  5'- aGCAgCGUGGGCGaGcGAGcgauccgaGCCCGGCCg -3'
miRNA:   3'- -CGU-GCAUCUGC-CaCUCua------UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 34749 0.71 0.847027
Target:  5'- cGCGCGacGGcGCGGUGGGAcGCggcaCGGCCg -3'
miRNA:   3'- -CGUGCa-UC-UGCCACUCUaUGg---GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 35670 0.67 0.955055
Target:  5'- -gACGUGGucaacgaggucaucCGGgaaGAG-UGCCCGGCCu -3'
miRNA:   3'- cgUGCAUCu-------------GCCa--CUCuAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 36986 0.69 0.896973
Target:  5'- cGCGCGcAGGuCGGcGAGGcggACCCGGUa -3'
miRNA:   3'- -CGUGCaUCU-GCCaCUCUa--UGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 37755 0.66 0.982255
Target:  5'- gGCGCGgcggcgccGGCGG-GAGcgGCCgucgucguCGGCCg -3'
miRNA:   3'- -CGUGCau------CUGCCaCUCuaUGG--------GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 38741 0.69 0.926103
Target:  5'- cGCACGUGGACGGcaucaaucUGAag-ACCUGGaCg -3'
miRNA:   3'- -CGUGCAUCUGCC--------ACUcuaUGGGCCgG- -5'
10853 5' -54.3 NC_002794.1 + 43869 1.15 0.00283
Target:  5'- gGCACGUAGACGGUGAGAUACCCGGCCg -3'
miRNA:   3'- -CGUGCAUCUGCCACUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 43979 0.73 0.751063
Target:  5'- aGCugGUcguuggagccGGACGuGUGGGAgcacgGCgCGGCCg -3'
miRNA:   3'- -CGugCA----------UCUGC-CACUCUa----UGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 45456 0.67 0.970321
Target:  5'- cGCGCGUcaGCGGgcccaGGGUcccgaGCUCGGCCu -3'
miRNA:   3'- -CGUGCAucUGCCac---UCUA-----UGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 47320 0.74 0.692875
Target:  5'- ------cGAgGGUGGGGUGCCCGGCUc -3'
miRNA:   3'- cgugcauCUgCCACUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 50781 0.66 0.983023
Target:  5'- gGCGCGUcucGGGCGGcgccuccucGCCCGGCg -3'
miRNA:   3'- -CGUGCA---UCUGCCacucua---UGGGCCGg -5'
10853 5' -54.3 NC_002794.1 + 51258 0.67 0.960867
Target:  5'- -gGCGUggGGGCGGgccGGGAggcagGCgCGGCCc -3'
miRNA:   3'- cgUGCA--UCUGCCa--CUCUa----UGgGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 52957 0.67 0.964224
Target:  5'- aGCAgGUccuCGGccAGGUGCUCGGCCu -3'
miRNA:   3'- -CGUgCAucuGCCacUCUAUGGGCCGG- -5'
10853 5' -54.3 NC_002794.1 + 55349 0.66 0.975637
Target:  5'- cGCGCccgAGGCGGccGAGGcgGCCgaggCGGCCg -3'
miRNA:   3'- -CGUGca-UCUGCCa-CUCUa-UGG----GCCGG- -5'
10853 5' -54.3 NC_002794.1 + 56905 0.68 0.931243
Target:  5'- cGCGCGUGGccACGGgcgccGGGcUGCC-GGCCu -3'
miRNA:   3'- -CGUGCAUC--UGCCa----CUCuAUGGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.