miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 68990 0.66 0.96142
Target:  5'- --cGGCGucGACGcuucuccuUCCUCCuCCGCGUg -3'
miRNA:   3'- acaUCGC--CUGCuuu-----AGGAGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 82677 0.66 0.96142
Target:  5'- --cGGCGGAuCGcAcgCCguucgCCCgGCGCg -3'
miRNA:   3'- acaUCGCCU-GCuUuaGGa----GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 32047 0.66 0.96142
Target:  5'- --cAGCGG-CGu-GUCCUCCaCgGCGUu -3'
miRNA:   3'- acaUCGCCuGCuuUAGGAGG-GgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 30960 0.66 0.96142
Target:  5'- --aGGCacgGGAUGucgugacGGUCCUCCCCG-GCg -3'
miRNA:   3'- acaUCG---CCUGCu------UUAGGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 58075 0.66 0.96142
Target:  5'- --cGGCgGGACGGGcggCCcggCgCCCGCGCu -3'
miRNA:   3'- acaUCG-CCUGCUUua-GGa--G-GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 692 0.66 0.960383
Target:  5'- ---cGCGGcCGGAGUcggcuguuuuugggCCUCUCCGCGa -3'
miRNA:   3'- acauCGCCuGCUUUA--------------GGAGGGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 56053 0.66 0.959327
Target:  5'- cGUGGgcaGGugGAAGUUccaCUCCaugagggccagcaggCCGCGCa -3'
miRNA:   3'- aCAUCg--CCugCUUUAG---GAGG---------------GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 7075 0.66 0.957889
Target:  5'- gGUAGCc-GCGGGA-CCUCCCCcuCGCu -3'
miRNA:   3'- aCAUCGccUGCUUUaGGAGGGGc-GCG- -5'
10854 3' -55.5 NC_002794.1 + 143126 0.66 0.957889
Target:  5'- cGUGGCgcaGGucuCGGGccaCUCCCCGCGg -3'
miRNA:   3'- aCAUCG---CCu--GCUUuagGAGGGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 13099 0.66 0.957889
Target:  5'- --cGGgGGACGAGGUgCguucggcggggUCgCCGCGCg -3'
miRNA:   3'- acaUCgCCUGCUUUAgG-----------AGgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 138442 0.66 0.957889
Target:  5'- gGUGGCGG-CGGcg-CCUCggCCUGCGa -3'
miRNA:   3'- aCAUCGCCuGCUuuaGGAG--GGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 49612 0.66 0.957889
Target:  5'- --cGGCGGGCGccggcGGcgCCUCgCCCGCc- -3'
miRNA:   3'- acaUCGCCUGC-----UUuaGGAG-GGGCGcg -5'
10854 3' -55.5 NC_002794.1 + 101127 0.66 0.954143
Target:  5'- cGUGGCGcgccuGGCccgcaUCUCCCUGCGCa -3'
miRNA:   3'- aCAUCGC-----CUGcuuuaGGAGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 96476 0.66 0.954143
Target:  5'- cGU-GCGGGaGAucGUCUUCUCCGuCGCa -3'
miRNA:   3'- aCAuCGCCUgCUu-UAGGAGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 18834 0.66 0.954143
Target:  5'- cGgcGCGGAgGAGA-CCUCgagCGCGCc -3'
miRNA:   3'- aCauCGCCUgCUUUaGGAGgg-GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 63014 0.66 0.954143
Target:  5'- cGUGGCuGGAgcuGGUgCUCgCCUGCGCg -3'
miRNA:   3'- aCAUCG-CCUgcuUUAgGAG-GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 127994 0.66 0.953367
Target:  5'- gUGUcugGGCGGACGAccgucgucggCCgCCCCGUcgGCu -3'
miRNA:   3'- -ACA---UCGCCUGCUuua-------GGaGGGGCG--CG- -5'
10854 3' -55.5 NC_002794.1 + 49686 0.66 0.950584
Target:  5'- --aAGCGGACGAGucgcGUCggcacgacgacucgCCCCGgGCa -3'
miRNA:   3'- acaUCGCCUGCUU----UAGga------------GGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 66631 0.66 0.950177
Target:  5'- gGUGGCGGGagGAGGUCCgUCCggGgGCa -3'
miRNA:   3'- aCAUCGCCUg-CUUUAGG-AGGggCgCG- -5'
10854 3' -55.5 NC_002794.1 + 55848 0.66 0.949769
Target:  5'- uUGUAGUGGAUGGugaugcgggccgcGAUCUgcgcgCCCaGUGCa -3'
miRNA:   3'- -ACAUCGCCUGCU-------------UUAGGa----GGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.