Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10854 | 3' | -55.5 | NC_002794.1 | + | 145772 | 0.66 | 0.94599 |
Target: 5'- --gAGCGccacGCGGAGUCgUCCCCG-GCc -3' miRNA: 3'- acaUCGCc---UGCUUUAGgAGGGGCgCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 7075 | 0.66 | 0.957889 |
Target: 5'- gGUAGCc-GCGGGA-CCUCCCCcuCGCu -3' miRNA: 3'- aCAUCGccUGCUUUaGGAGGGGc-GCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 18834 | 0.66 | 0.954143 |
Target: 5'- cGgcGCGGAgGAGA-CCUCgagCGCGCc -3' miRNA: 3'- aCauCGCCUgCUUUaGGAGgg-GCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 96476 | 0.66 | 0.954143 |
Target: 5'- cGU-GCGGGaGAucGUCUUCUCCGuCGCa -3' miRNA: 3'- aCAuCGCCUgCUu-UAGGAGGGGC-GCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 101127 | 0.66 | 0.954143 |
Target: 5'- cGUGGCGcgccuGGCccgcaUCUCCCUGCGCa -3' miRNA: 3'- aCAUCGC-----CUGcuuuaGGAGGGGCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 49686 | 0.66 | 0.950584 |
Target: 5'- --aAGCGGACGAGucgcGUCggcacgacgacucgCCCCGgGCa -3' miRNA: 3'- acaUCGCCUGCUU----UAGga------------GGGGCgCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 127994 | 0.66 | 0.953367 |
Target: 5'- gUGUcugGGCGGACGAccgucgucggCCgCCCCGUcgGCu -3' miRNA: 3'- -ACA---UCGCCUGCUuua-------GGaGGGGCG--CG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 55848 | 0.66 | 0.949769 |
Target: 5'- uUGUAGUGGAUGGugaugcgggccgcGAUCUgcgcgCCCaGUGCa -3' miRNA: 3'- -ACAUCGCCUGCU-------------UUAGGa----GGGgCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 66631 | 0.66 | 0.950177 |
Target: 5'- gGUGGCGGGagGAGGUCCgUCCggGgGCa -3' miRNA: 3'- aCAUCGCCUg-CUUUAGG-AGGggCgCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 143126 | 0.66 | 0.957889 |
Target: 5'- cGUGGCgcaGGucuCGGGccaCUCCCCGCGg -3' miRNA: 3'- aCAUCG---CCu--GCUUuagGAGGGGCGCg -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 63014 | 0.66 | 0.954143 |
Target: 5'- cGUGGCuGGAgcuGGUgCUCgCCUGCGCg -3' miRNA: 3'- aCAUCG-CCUgcuUUAgGAG-GGGCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 13099 | 0.66 | 0.957889 |
Target: 5'- --cGGgGGACGAGGUgCguucggcggggUCgCCGCGCg -3' miRNA: 3'- acaUCgCCUGCUUUAgG-----------AGgGGCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 82677 | 0.66 | 0.96142 |
Target: 5'- --cGGCGGAuCGcAcgCCguucgCCCgGCGCg -3' miRNA: 3'- acaUCGCCU-GCuUuaGGa----GGGgCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 32047 | 0.66 | 0.96142 |
Target: 5'- --cAGCGG-CGu-GUCCUCCaCgGCGUu -3' miRNA: 3'- acaUCGCCuGCuuUAGGAGG-GgCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 30960 | 0.66 | 0.96142 |
Target: 5'- --aGGCacgGGAUGucgugacGGUCCUCCCCG-GCg -3' miRNA: 3'- acaUCG---CCUGCu------UUAGGAGGGGCgCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 58075 | 0.66 | 0.96142 |
Target: 5'- --cGGCgGGACGGGcggCCcggCgCCCGCGCu -3' miRNA: 3'- acaUCG-CCUGCUUua-GGa--G-GGGCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 692 | 0.66 | 0.960383 |
Target: 5'- ---cGCGGcCGGAGUcggcuguuuuugggCCUCUCCGCGa -3' miRNA: 3'- acauCGCCuGCUUUA--------------GGAGGGGCGCg -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 56053 | 0.66 | 0.959327 |
Target: 5'- cGUGGgcaGGugGAAGUUccaCUCCaugagggccagcaggCCGCGCa -3' miRNA: 3'- aCAUCg--CCugCUUUAG---GAGG---------------GGCGCG- -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 49612 | 0.66 | 0.957889 |
Target: 5'- --cGGCGGGCGccggcGGcgCCUCgCCCGCc- -3' miRNA: 3'- acaUCGCCUGC-----UUuaGGAG-GGGCGcg -5' |
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10854 | 3' | -55.5 | NC_002794.1 | + | 138442 | 0.66 | 0.957889 |
Target: 5'- gGUGGCGG-CGGcg-CCUCggCCUGCGa -3' miRNA: 3'- aCAUCGCCuGCUuuaGGAG--GGGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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