miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 43089 1.11 0.003185
Target:  5'- cUGUAGCGGACGAAAUCCUCCCCGCGCu -3'
miRNA:   3'- -ACAUCGCCUGCUUUAGGAGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 143723 0.76 0.487859
Target:  5'- --cGGCGGGCGucGUCCUCgCCCGC-Cg -3'
miRNA:   3'- acaUCGCCUGCuuUAGGAG-GGGCGcG- -5'
10854 3' -55.5 NC_002794.1 + 38685 0.75 0.535561
Target:  5'- ---cGCGGACGggGUCa-CCgCCGCGCc -3'
miRNA:   3'- acauCGCCUGCuuUAGgaGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 131731 0.74 0.594764
Target:  5'- --gAGCGGGCGAGAUCgCgcucgCCUCGCGa -3'
miRNA:   3'- acaUCGCCUGCUUUAG-Ga----GGGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 187250 0.74 0.624803
Target:  5'- -aUAGCGGcUGAAGUCCUgCCgcuCGCGCg -3'
miRNA:   3'- acAUCGCCuGCUUUAGGAgGG---GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 141870 0.73 0.664893
Target:  5'- gGUGGUcucgacGGACGAAAgacUCCUCCCguccaggcgaCGCGCc -3'
miRNA:   3'- aCAUCG------CCUGCUUU---AGGAGGG----------GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 70227 0.72 0.694721
Target:  5'- gGUcgGGCGGGCGGccggCCgCCCCGCaGCa -3'
miRNA:   3'- aCA--UCGCCUGCUuua-GGaGGGGCG-CG- -5'
10854 3' -55.5 NC_002794.1 + 163825 0.72 0.704573
Target:  5'- uUGUGGagauGGACGAuGUCCga-CCGCGCu -3'
miRNA:   3'- -ACAUCg---CCUGCUuUAGGaggGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 100547 0.71 0.743311
Target:  5'- --cAGCGGGCGGc--CUUCCCCGUGg -3'
miRNA:   3'- acaUCGCCUGCUuuaGGAGGGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 120151 0.71 0.762154
Target:  5'- gGUGcCGGACGAcgaggaccucgaGAUCCUCCgCGcCGCc -3'
miRNA:   3'- aCAUcGCCUGCU------------UUAGGAGGgGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 181224 0.71 0.765872
Target:  5'- --cAGC-GACGAGAUCCggcgacggcgcgccuUCCaCCGCGCg -3'
miRNA:   3'- acaUCGcCUGCUUUAGG---------------AGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 43125 0.71 0.780554
Target:  5'- --aGGCGGGCGAGAcagaacagcgCCacguUCCCCaGCGCg -3'
miRNA:   3'- acaUCGCCUGCUUUa---------GG----AGGGG-CGCG- -5'
10854 3' -55.5 NC_002794.1 + 81612 0.71 0.780554
Target:  5'- aGUcGCGGACGAGcacgcguUCCgcagcUUCCUGCGCa -3'
miRNA:   3'- aCAuCGCCUGCUUu------AGG-----AGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 106358 0.7 0.789567
Target:  5'- --cGGCGGGCGGGcgCCggUUCGCGCg -3'
miRNA:   3'- acaUCGCCUGCUUuaGGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 113182 0.7 0.789567
Target:  5'- --cGGCGGucGCGGAGgcgCCUCCgCCGcCGCc -3'
miRNA:   3'- acaUCGCC--UGCUUUa--GGAGG-GGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 72439 0.7 0.798442
Target:  5'- --cGGCGGAgGGA--CCggcggcgCCCCGCGCc -3'
miRNA:   3'- acaUCGCCUgCUUuaGGa------GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 136732 0.7 0.815753
Target:  5'- cGUccaGGCGGuCGAGGUucgUCUCCCCGaGCu -3'
miRNA:   3'- aCA---UCGCCuGCUUUA---GGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 102392 0.7 0.832423
Target:  5'- cGUGGUGGAacuGGUCUUCCgCGaCGCg -3'
miRNA:   3'- aCAUCGCCUgcuUUAGGAGGgGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 117388 0.7 0.832423
Target:  5'- gGUcGCGG-CGAAGcgggCCUCCaCCGuCGCg -3'
miRNA:   3'- aCAuCGCCuGCUUUa---GGAGG-GGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 85551 0.69 0.840499
Target:  5'- -aUGGCcccgGGACGGcuUCCUgCCaCGCGCg -3'
miRNA:   3'- acAUCG----CCUGCUuuAGGAgGG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.