miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 46625 0.69 0.848393
Target:  5'- --gGGCuGGACGAGAUCaCguucCgCCCGUGCa -3'
miRNA:   3'- acaUCG-CCUGCUUUAG-Ga---G-GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 55602 0.69 0.848393
Target:  5'- uUGaAGCGG-CGGAAcgCCagCCCGUGCa -3'
miRNA:   3'- -ACaUCGCCuGCUUUa-GGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 183594 0.69 0.856858
Target:  5'- gGUGG-GGGCGGAGgggggCCgcgcgcggccggcgcCCCCGCGCc -3'
miRNA:   3'- aCAUCgCCUGCUUUa----GGa--------------GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 176207 0.69 0.863608
Target:  5'- gGUGGCGGAUGGAaggcucgcucGUCUcgCCCgGUGUc -3'
miRNA:   3'- aCAUCGCCUGCUU----------UAGGa-GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 90475 0.69 0.863608
Target:  5'- ---cGCGcGGCGggG-CCgccgUCCCGCGCg -3'
miRNA:   3'- acauCGC-CUGCuuUaGGa---GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 190068 0.69 0.863608
Target:  5'- ---cGCGGugGAAcaccagggcGUUCUCgUCGCGCa -3'
miRNA:   3'- acauCGCCugCUU---------UAGGAGgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 138971 0.69 0.870918
Target:  5'- --cGGCGGACGGGuuggCCUggcgggCCUGCGCg -3'
miRNA:   3'- acaUCGCCUGCUUua--GGAg-----GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 89211 0.69 0.870918
Target:  5'- -uUAGCGG-CGAAGggagCCg-CCCGUGCa -3'
miRNA:   3'- acAUCGCCuGCUUUa---GGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 8305 0.69 0.870918
Target:  5'- --aGGaGGGCGAAGgcggcaccgCCgcgCCCCGCGCc -3'
miRNA:   3'- acaUCgCCUGCUUUa--------GGa--GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 8118 0.69 0.870918
Target:  5'- --gAGCGGGCGGcggCCUCCUCG-GUg -3'
miRNA:   3'- acaUCGCCUGCUuuaGGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 38640 0.69 0.871638
Target:  5'- gUGcGGCGcGACGGAGgcucgacuauuugaCUCCCgCGCGCg -3'
miRNA:   3'- -ACaUCGC-CUGCUUUag------------GAGGG-GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 153439 0.69 0.877321
Target:  5'- gGgcGUGGACGAucgaaccgaccgaGAUCgucuUUCCgCCGCGCa -3'
miRNA:   3'- aCauCGCCUGCU-------------UUAG----GAGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 70488 0.69 0.878023
Target:  5'- aUGUcggGGCaGGGCGAccgacaggagccGGUCCagCCCGUGCu -3'
miRNA:   3'- -ACA---UCG-CCUGCU------------UUAGGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 887 0.69 0.878023
Target:  5'- cGUGcgcGCGGGCcGGGUgCCaacgccgcUCCCCGCGCc -3'
miRNA:   3'- aCAU---CGCCUGcUUUA-GG--------AGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 115589 0.69 0.878023
Target:  5'- cGUAGCGGcuGCGGucGAcCCgcucgCCCgGCGCc -3'
miRNA:   3'- aCAUCGCC--UGCU--UUaGGa----GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 127148 0.69 0.878023
Target:  5'- cGgcGCGGGCGAAGaucaaccaccUCCaCCCuCGcCGCa -3'
miRNA:   3'- aCauCGCCUGCUUU----------AGGaGGG-GC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 53219 0.68 0.884236
Target:  5'- cGUcgAGCGG-CGAAacgguccGUCCUCggCCCGcCGCg -3'
miRNA:   3'- aCA--UCGCCuGCUU-------UAGGAG--GGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 40313 0.68 0.884916
Target:  5'- --gAG-GGACGGuuuUCCUCaCCCGcCGCg -3'
miRNA:   3'- acaUCgCCUGCUuu-AGGAG-GGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 120085 0.68 0.891594
Target:  5'- gGUGGCGGcgACGAccgugCCgagcgCgCCGCGCg -3'
miRNA:   3'- aCAUCGCC--UGCUuua--GGa----GgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 13349 0.68 0.891594
Target:  5'- gGUGGCGG-CGcc--CCUCgCCCGgGCc -3'
miRNA:   3'- aCAUCGCCuGCuuuaGGAG-GGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.