miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 143254 0.66 0.94599
Target:  5'- cGUGGUgcaGGAgGAAggCCcggCCCgGCGCc -3'
miRNA:   3'- aCAUCG---CCUgCUUuaGGa--GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 21667 0.66 0.94599
Target:  5'- gGUGGCGGcgGCGguAUUcgcccgcuccggCUCCCCGCcucgGCg -3'
miRNA:   3'- aCAUCGCC--UGCuuUAG------------GAGGGGCG----CG- -5'
10854 3' -55.5 NC_002794.1 + 145772 0.66 0.94599
Target:  5'- --gAGCGccacGCGGAGUCgUCCCCG-GCc -3'
miRNA:   3'- acaUCGCc---UGCUUUAGgAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 51086 0.67 0.941578
Target:  5'- cGUGGCGcgcucggaaaaGACGA---CCgcgCCUCGCGCu -3'
miRNA:   3'- aCAUCGC-----------CUGCUuuaGGa--GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 34756 0.67 0.941578
Target:  5'- cGgcGCGGugGGAcgcggcacggCCg-CCCGCGCc -3'
miRNA:   3'- aCauCGCCugCUUua--------GGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 145366 0.67 0.941124
Target:  5'- gUGUGGUcaccGGGCGGAGaCgCUCCgcucgguggcgcgCCGCGCg -3'
miRNA:   3'- -ACAUCG----CCUGCUUUaG-GAGG-------------GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 50785 0.67 0.936938
Target:  5'- cGUcuCGGGCGGcg-CCUCCUCGCccgGCg -3'
miRNA:   3'- aCAucGCCUGCUuuaGGAGGGGCG---CG- -5'
10854 3' -55.5 NC_002794.1 + 68912 0.67 0.936938
Target:  5'- cGUcGCGGggcucGCGgcGUCCUCgucgCCCGCGg -3'
miRNA:   3'- aCAuCGCC-----UGCuuUAGGAG----GGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 55319 0.67 0.936938
Target:  5'- gGgcGCGGGCGGcuUCCgaggaCCCgggguCGCGCc -3'
miRNA:   3'- aCauCGCCUGCUuuAGGa----GGG-----GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 78394 0.67 0.936938
Target:  5'- --cGGCGacGACGAGG-CCUCgCCGCGa -3'
miRNA:   3'- acaUCGC--CUGCUUUaGGAGgGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 184088 0.67 0.936462
Target:  5'- gUGUAGCGGcagaacgGCGAAcgcgCCagcgCCCCGCu- -3'
miRNA:   3'- -ACAUCGCC-------UGCUUua--GGa---GGGGCGcg -5'
10854 3' -55.5 NC_002794.1 + 86927 0.67 0.935502
Target:  5'- cGUGGCGGgcaggcgggGCGGGAUCCggcgagcgucgacgUCCgCUGCGg -3'
miRNA:   3'- aCAUCGCC---------UGCUUUAGG--------------AGG-GGCGCg -5'
10854 3' -55.5 NC_002794.1 + 20395 0.67 0.935502
Target:  5'- gUGcGGCGGGacCGGgagcggggccacacGGUCUaCCCCGCGCc -3'
miRNA:   3'- -ACaUCGCCU--GCU--------------UUAGGaGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 110228 0.67 0.930565
Target:  5'- cGUc-CGGAUcGAGUCCUCcgcggcggagguuuCCCGCGCg -3'
miRNA:   3'- aCAucGCCUGcUUUAGGAG--------------GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 630 0.67 0.926973
Target:  5'- gUGUGGCGuuCGcc-UCCcgUCCCCGcCGCg -3'
miRNA:   3'- -ACAUCGCcuGCuuuAGG--AGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 113335 0.67 0.926973
Target:  5'- gGUAGCGGACGugggCCUgUUCGUaagGCg -3'
miRNA:   3'- aCAUCGCCUGCuuuaGGAgGGGCG---CG- -5'
10854 3' -55.5 NC_002794.1 + 105974 0.67 0.925926
Target:  5'- ---cGCGGACGAGuuuccggucgcGUUCgagccgaugcugCCCCGCGUg -3'
miRNA:   3'- acauCGCCUGCUU-----------UAGGa-----------GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 55411 0.67 0.921646
Target:  5'- --aGGCGGcCGAGgcgaccccggcGUCCgcgucgCCCCGCaGCg -3'
miRNA:   3'- acaUCGCCuGCUU-----------UAGGa-----GGGGCG-CG- -5'
10854 3' -55.5 NC_002794.1 + 128486 0.67 0.921646
Target:  5'- gGUcGCGGAcCGGGggCCgUCCCUucgGCGCa -3'
miRNA:   3'- aCAuCGCCU-GCUUuaGG-AGGGG---CGCG- -5'
10854 3' -55.5 NC_002794.1 + 127380 0.67 0.920003
Target:  5'- gUGUcGGCGGACGGcaccugugacuucaCCgacgcacCCCCGCGCu -3'
miRNA:   3'- -ACA-UCGCCUGCUuua-----------GGa------GGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.