miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 106392 0.67 0.916089
Target:  5'- --cGGCGGGCGAAcgGUCggaCCCCG-GCg -3'
miRNA:   3'- acaUCGCCUGCUU--UAGga-GGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 150060 0.68 0.910892
Target:  5'- ---uGCGGugGGAcgagcgcgcucuggCCUUCCUGCGCu -3'
miRNA:   3'- acauCGCCugCUUua------------GGAGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 21552 0.68 0.910304
Target:  5'- --gAGCGGG-GAAaaaGUCCUCCUCGgGUu -3'
miRNA:   3'- acaUCGCCUgCUU---UAGGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 142509 0.68 0.910304
Target:  5'- cGUGGCGGaACGGAacGUCgUCUugucgUCGUGCg -3'
miRNA:   3'- aCAUCGCC-UGCUU--UAGgAGG-----GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 810 0.68 0.909713
Target:  5'- --gGGCGGuCGGGAgggggccuuuuccUCCggUCCCCgGCGCg -3'
miRNA:   3'- acaUCGCCuGCUUU-------------AGG--AGGGG-CGCG- -5'
10854 3' -55.5 NC_002794.1 + 187507 0.68 0.904291
Target:  5'- --aGGCGGccagggcgcccGCGGAGgaaCUCCCCGcCGCc -3'
miRNA:   3'- acaUCGCC-----------UGCUUUag-GAGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 129844 0.68 0.904291
Target:  5'- --aGGCGGAgCGGAA-CCUCCgUCGCGa -3'
miRNA:   3'- acaUCGCCU-GCUUUaGGAGG-GGCGCg -5'
10854 3' -55.5 NC_002794.1 + 93900 0.68 0.898054
Target:  5'- cGUGGaCGGACaGGAGUgCCUagCCGCGUc -3'
miRNA:   3'- aCAUC-GCCUG-CUUUA-GGAggGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 186496 0.68 0.898054
Target:  5'- --cGGCGG-CGcg--CCUCCCCGcCGUg -3'
miRNA:   3'- acaUCGCCuGCuuuaGGAGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 18888 0.68 0.898054
Target:  5'- cGgcGCGGAgCGucaccCCUCCCCgacgGCGCc -3'
miRNA:   3'- aCauCGCCU-GCuuua-GGAGGGG----CGCG- -5'
10854 3' -55.5 NC_002794.1 + 111730 0.68 0.891594
Target:  5'- --gAGCGGGCGAAcgCgCUCgucgagcuggCgCCGCGCg -3'
miRNA:   3'- acaUCGCCUGCUUuaG-GAG----------G-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 188279 0.68 0.891594
Target:  5'- gGUAGCGGAUGcAGGg---CgCCGCGCg -3'
miRNA:   3'- aCAUCGCCUGC-UUUaggaGgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 120085 0.68 0.891594
Target:  5'- gGUGGCGGcgACGAccgugCCgagcgCgCCGCGCg -3'
miRNA:   3'- aCAUCGCC--UGCUuua--GGa----GgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 61832 0.68 0.891594
Target:  5'- --cGGCGGcCGgcGUCaCUCCgcuCCGCGCc -3'
miRNA:   3'- acaUCGCCuGCuuUAG-GAGG---GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 13349 0.68 0.891594
Target:  5'- gGUGGCGG-CGcc--CCUCgCCCGgGCc -3'
miRNA:   3'- aCAUCGCCuGCuuuaGGAG-GGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 40313 0.68 0.884916
Target:  5'- --gAG-GGACGGuuuUCCUCaCCCGcCGCg -3'
miRNA:   3'- acaUCgCCUGCUuu-AGGAG-GGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 53219 0.68 0.884236
Target:  5'- cGUcgAGCGG-CGAAacgguccGUCCUCggCCCGcCGCg -3'
miRNA:   3'- aCA--UCGCCuGCUU-------UAGGAG--GGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 127148 0.69 0.878023
Target:  5'- cGgcGCGGGCGAAGaucaaccaccUCCaCCCuCGcCGCa -3'
miRNA:   3'- aCauCGCCUGCUUU----------AGGaGGG-GC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 115589 0.69 0.878023
Target:  5'- cGUAGCGGcuGCGGucGAcCCgcucgCCCgGCGCc -3'
miRNA:   3'- aCAUCGCC--UGCU--UUaGGa----GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 887 0.69 0.878023
Target:  5'- cGUGcgcGCGGGCcGGGUgCCaacgccgcUCCCCGCGCc -3'
miRNA:   3'- aCAU---CGCCUGcUUUA-GG--------AGGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.