miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 630 0.67 0.926973
Target:  5'- gUGUGGCGuuCGcc-UCCcgUCCCCGcCGCg -3'
miRNA:   3'- -ACAUCGCcuGCuuuAGG--AGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 692 0.66 0.960383
Target:  5'- ---cGCGGcCGGAGUcggcuguuuuugggCCUCUCCGCGa -3'
miRNA:   3'- acauCGCCuGCUUUA--------------GGAGGGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 810 0.68 0.909713
Target:  5'- --gGGCGGuCGGGAgggggccuuuuccUCCggUCCCCgGCGCg -3'
miRNA:   3'- acaUCGCCuGCUUU-------------AGG--AGGGG-CGCG- -5'
10854 3' -55.5 NC_002794.1 + 887 0.69 0.878023
Target:  5'- cGUGcgcGCGGGCcGGGUgCCaacgccgcUCCCCGCGCc -3'
miRNA:   3'- aCAU---CGCCUGcUUUA-GG--------AGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 7075 0.66 0.957889
Target:  5'- gGUAGCc-GCGGGA-CCUCCCCcuCGCu -3'
miRNA:   3'- aCAUCGccUGCUUUaGGAGGGGc-GCG- -5'
10854 3' -55.5 NC_002794.1 + 8118 0.69 0.870918
Target:  5'- --gAGCGGGCGGcggCCUCCUCG-GUg -3'
miRNA:   3'- acaUCGCCUGCUuuaGGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 8305 0.69 0.870918
Target:  5'- --aGGaGGGCGAAGgcggcaccgCCgcgCCCCGCGCc -3'
miRNA:   3'- acaUCgCCUGCUUUa--------GGa--GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 13099 0.66 0.957889
Target:  5'- --cGGgGGACGAGGUgCguucggcggggUCgCCGCGCg -3'
miRNA:   3'- acaUCgCCUGCUUUAgG-----------AGgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 13349 0.68 0.891594
Target:  5'- gGUGGCGG-CGcc--CCUCgCCCGgGCc -3'
miRNA:   3'- aCAUCGCCuGCuuuaGGAG-GGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 18834 0.66 0.954143
Target:  5'- cGgcGCGGAgGAGA-CCUCgagCGCGCc -3'
miRNA:   3'- aCauCGCCUgCUUUaGGAGgg-GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 18888 0.68 0.898054
Target:  5'- cGgcGCGGAgCGucaccCCUCCCCgacgGCGCc -3'
miRNA:   3'- aCauCGCCU-GCuuua-GGAGGGG----CGCG- -5'
10854 3' -55.5 NC_002794.1 + 20395 0.67 0.935502
Target:  5'- gUGcGGCGGGacCGGgagcggggccacacGGUCUaCCCCGCGCc -3'
miRNA:   3'- -ACaUCGCCU--GCU--------------UUAGGaGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 21552 0.68 0.910304
Target:  5'- --gAGCGGG-GAAaaaGUCCUCCUCGgGUu -3'
miRNA:   3'- acaUCGCCUgCUU---UAGGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 21667 0.66 0.94599
Target:  5'- gGUGGCGGcgGCGguAUUcgcccgcuccggCUCCCCGCcucgGCg -3'
miRNA:   3'- aCAUCGCC--UGCuuUAG------------GAGGGGCG----CG- -5'
10854 3' -55.5 NC_002794.1 + 30960 0.66 0.96142
Target:  5'- --aGGCacgGGAUGucgugacGGUCCUCCCCG-GCg -3'
miRNA:   3'- acaUCG---CCUGCu------UUAGGAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 32047 0.66 0.96142
Target:  5'- --cAGCGG-CGu-GUCCUCCaCgGCGUu -3'
miRNA:   3'- acaUCGCCuGCuuUAGGAGG-GgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 34756 0.67 0.941578
Target:  5'- cGgcGCGGugGGAcgcggcacggCCg-CCCGCGCc -3'
miRNA:   3'- aCauCGCCugCUUua--------GGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 38640 0.69 0.871638
Target:  5'- gUGcGGCGcGACGGAGgcucgacuauuugaCUCCCgCGCGCg -3'
miRNA:   3'- -ACaUCGC-CUGCUUUag------------GAGGG-GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 38685 0.75 0.535561
Target:  5'- ---cGCGGACGggGUCa-CCgCCGCGCc -3'
miRNA:   3'- acauCGCCUGCuuUAGgaGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 40313 0.68 0.884916
Target:  5'- --gAG-GGACGGuuuUCCUCaCCCGcCGCg -3'
miRNA:   3'- acaUCgCCUGCUuu-AGGAG-GGGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.