miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 43089 1.11 0.003185
Target:  5'- cUGUAGCGGACGAAAUCCUCCCCGCGCu -3'
miRNA:   3'- -ACAUCGCCUGCUUUAGGAGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 43125 0.71 0.780554
Target:  5'- --aGGCGGGCGAGAcagaacagcgCCacguUCCCCaGCGCg -3'
miRNA:   3'- acaUCGCCUGCUUUa---------GG----AGGGG-CGCG- -5'
10854 3' -55.5 NC_002794.1 + 46625 0.69 0.848393
Target:  5'- --gGGCuGGACGAGAUCaCguucCgCCCGUGCa -3'
miRNA:   3'- acaUCG-CCUGCUUUAG-Ga---G-GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 49612 0.66 0.957889
Target:  5'- --cGGCGGGCGccggcGGcgCCUCgCCCGCc- -3'
miRNA:   3'- acaUCGCCUGC-----UUuaGGAG-GGGCGcg -5'
10854 3' -55.5 NC_002794.1 + 49686 0.66 0.950584
Target:  5'- --aAGCGGACGAGucgcGUCggcacgacgacucgCCCCGgGCa -3'
miRNA:   3'- acaUCGCCUGCUU----UAGga------------GGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 50785 0.67 0.936938
Target:  5'- cGUcuCGGGCGGcg-CCUCCUCGCccgGCg -3'
miRNA:   3'- aCAucGCCUGCUuuaGGAGGGGCG---CG- -5'
10854 3' -55.5 NC_002794.1 + 51086 0.67 0.941578
Target:  5'- cGUGGCGcgcucggaaaaGACGA---CCgcgCCUCGCGCu -3'
miRNA:   3'- aCAUCGC-----------CUGCUuuaGGa--GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 53219 0.68 0.884236
Target:  5'- cGUcgAGCGG-CGAAacgguccGUCCUCggCCCGcCGCg -3'
miRNA:   3'- aCA--UCGCCuGCUU-------UAGGAG--GGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 55319 0.67 0.936938
Target:  5'- gGgcGCGGGCGGcuUCCgaggaCCCgggguCGCGCc -3'
miRNA:   3'- aCauCGCCUGCUuuAGGa----GGG-----GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 55411 0.67 0.921646
Target:  5'- --aGGCGGcCGAGgcgaccccggcGUCCgcgucgCCCCGCaGCg -3'
miRNA:   3'- acaUCGCCuGCUU-----------UAGGa-----GGGGCG-CG- -5'
10854 3' -55.5 NC_002794.1 + 55602 0.69 0.848393
Target:  5'- uUGaAGCGG-CGGAAcgCCagCCCGUGCa -3'
miRNA:   3'- -ACaUCGCCuGCUUUa-GGagGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 55848 0.66 0.949769
Target:  5'- uUGUAGUGGAUGGugaugcgggccgcGAUCUgcgcgCCCaGUGCa -3'
miRNA:   3'- -ACAUCGCCUGCU-------------UUAGGa----GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 56053 0.66 0.959327
Target:  5'- cGUGGgcaGGugGAAGUUccaCUCCaugagggccagcaggCCGCGCa -3'
miRNA:   3'- aCAUCg--CCugCUUUAG---GAGG---------------GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 58075 0.66 0.96142
Target:  5'- --cGGCgGGACGGGcggCCcggCgCCCGCGCu -3'
miRNA:   3'- acaUCG-CCUGCUUua-GGa--G-GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 61832 0.68 0.891594
Target:  5'- --cGGCGGcCGgcGUCaCUCCgcuCCGCGCc -3'
miRNA:   3'- acaUCGCCuGCuuUAG-GAGG---GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 63014 0.66 0.954143
Target:  5'- cGUGGCuGGAgcuGGUgCUCgCCUGCGCg -3'
miRNA:   3'- aCAUCG-CCUgcuUUAgGAG-GGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 66631 0.66 0.950177
Target:  5'- gGUGGCGGGagGAGGUCCgUCCggGgGCa -3'
miRNA:   3'- aCAUCGCCUg-CUUUAGG-AGGggCgCG- -5'
10854 3' -55.5 NC_002794.1 + 68912 0.67 0.936938
Target:  5'- cGUcGCGGggcucGCGgcGUCCUCgucgCCCGCGg -3'
miRNA:   3'- aCAuCGCC-----UGCuuUAGGAG----GGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 68990 0.66 0.96142
Target:  5'- --cGGCGucGACGcuucuccuUCCUCCuCCGCGUg -3'
miRNA:   3'- acaUCGC--CUGCuuu-----AGGAGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 70227 0.72 0.694721
Target:  5'- gGUcgGGCGGGCGGccggCCgCCCCGCaGCa -3'
miRNA:   3'- aCA--UCGCCUGCUuua-GGaGGGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.