miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 3' -55.5 NC_002794.1 + 190068 0.69 0.863608
Target:  5'- ---cGCGGugGAAcaccagggcGUUCUCgUCGCGCa -3'
miRNA:   3'- acauCGCCugCUU---------UAGGAGgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 188279 0.68 0.891594
Target:  5'- gGUAGCGGAUGcAGGg---CgCCGCGCg -3'
miRNA:   3'- aCAUCGCCUGC-UUUaggaGgGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 187507 0.68 0.904291
Target:  5'- --aGGCGGccagggcgcccGCGGAGgaaCUCCCCGcCGCc -3'
miRNA:   3'- acaUCGCC-----------UGCUUUag-GAGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 187250 0.74 0.624803
Target:  5'- -aUAGCGGcUGAAGUCCUgCCgcuCGCGCg -3'
miRNA:   3'- acAUCGCCuGCUUUAGGAgGG---GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 186496 0.68 0.898054
Target:  5'- --cGGCGG-CGcg--CCUCCCCGcCGUg -3'
miRNA:   3'- acaUCGCCuGCuuuaGGAGGGGC-GCG- -5'
10854 3' -55.5 NC_002794.1 + 184088 0.67 0.936462
Target:  5'- gUGUAGCGGcagaacgGCGAAcgcgCCagcgCCCCGCu- -3'
miRNA:   3'- -ACAUCGCC-------UGCUUua--GGa---GGGGCGcg -5'
10854 3' -55.5 NC_002794.1 + 183594 0.69 0.856858
Target:  5'- gGUGG-GGGCGGAGgggggCCgcgcgcggccggcgcCCCCGCGCc -3'
miRNA:   3'- aCAUCgCCUGCUUUa----GGa--------------GGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 181224 0.71 0.765872
Target:  5'- --cAGC-GACGAGAUCCggcgacggcgcgccuUCCaCCGCGCg -3'
miRNA:   3'- acaUCGcCUGCUUUAGG---------------AGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 176207 0.69 0.863608
Target:  5'- gGUGGCGGAUGGAaggcucgcucGUCUcgCCCgGUGUc -3'
miRNA:   3'- aCAUCGCCUGCUU----------UAGGa-GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 163825 0.72 0.704573
Target:  5'- uUGUGGagauGGACGAuGUCCga-CCGCGCu -3'
miRNA:   3'- -ACAUCg---CCUGCUuUAGGaggGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 153439 0.69 0.877321
Target:  5'- gGgcGUGGACGAucgaaccgaccgaGAUCgucuUUCCgCCGCGCa -3'
miRNA:   3'- aCauCGCCUGCU-------------UUAG----GAGG-GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 150060 0.68 0.910892
Target:  5'- ---uGCGGugGGAcgagcgcgcucuggCCUUCCUGCGCu -3'
miRNA:   3'- acauCGCCugCUUua------------GGAGGGGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 145772 0.66 0.94599
Target:  5'- --gAGCGccacGCGGAGUCgUCCCCG-GCc -3'
miRNA:   3'- acaUCGCc---UGCUUUAGgAGGGGCgCG- -5'
10854 3' -55.5 NC_002794.1 + 145366 0.67 0.941124
Target:  5'- gUGUGGUcaccGGGCGGAGaCgCUCCgcucgguggcgcgCCGCGCg -3'
miRNA:   3'- -ACAUCG----CCUGCUUUaG-GAGG-------------GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 143723 0.76 0.487859
Target:  5'- --cGGCGGGCGucGUCCUCgCCCGC-Cg -3'
miRNA:   3'- acaUCGCCUGCuuUAGGAG-GGGCGcG- -5'
10854 3' -55.5 NC_002794.1 + 143254 0.66 0.94599
Target:  5'- cGUGGUgcaGGAgGAAggCCcggCCCgGCGCc -3'
miRNA:   3'- aCAUCG---CCUgCUUuaGGa--GGGgCGCG- -5'
10854 3' -55.5 NC_002794.1 + 143126 0.66 0.957889
Target:  5'- cGUGGCgcaGGucuCGGGccaCUCCCCGCGg -3'
miRNA:   3'- aCAUCG---CCu--GCUUuagGAGGGGCGCg -5'
10854 3' -55.5 NC_002794.1 + 142509 0.68 0.910304
Target:  5'- cGUGGCGGaACGGAacGUCgUCUugucgUCGUGCg -3'
miRNA:   3'- aCAUCGCC-UGCUU--UAGgAGG-----GGCGCG- -5'
10854 3' -55.5 NC_002794.1 + 141870 0.73 0.664893
Target:  5'- gGUGGUcucgacGGACGAAAgacUCCUCCCguccaggcgaCGCGCc -3'
miRNA:   3'- aCAUCG------CCUGCUUU---AGGAGGG----------GCGCG- -5'
10854 3' -55.5 NC_002794.1 + 138971 0.69 0.870918
Target:  5'- --cGGCGGACGGGuuggCCUggcgggCCUGCGCg -3'
miRNA:   3'- acaUCGCCUGCUUua--GGAg-----GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.