miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 137549 0.66 0.906489
Target:  5'- uCGGGCGcGA-AGAACGucGCGCCGCc- -3'
miRNA:   3'- cGCCCGCuCUgUCUUGU--CGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 105937 0.66 0.906489
Target:  5'- aCGGGCuGGACGcgcuguacGAACGGCugggggccGCCGCGg -3'
miRNA:   3'- cGCCCGcUCUGU--------CUUGUCG--------CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 34265 0.66 0.906489
Target:  5'- gGCGGaccgcGCGcAGGCGGc-CAGCGCCAgCGa -3'
miRNA:   3'- -CGCC-----CGC-UCUGUCuuGUCGCGGU-GCa -5'
10854 5' -57.7 NC_002794.1 + 101031 0.66 0.906489
Target:  5'- cGCGGGcCGGGcGCGGGuCGGCcGCUACu- -3'
miRNA:   3'- -CGCCC-GCUC-UGUCUuGUCG-CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 190974 0.66 0.906489
Target:  5'- -gGGGC-AG-CAGAgcagGCAGCGCgGCGa -3'
miRNA:   3'- cgCCCGcUCuGUCU----UGUCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 131732 0.66 0.906489
Target:  5'- aGCGGGCGAGAUcGcGCu-CGCCucGCGa -3'
miRNA:   3'- -CGCCCGCUCUGuCuUGucGCGG--UGCa -5'
10854 5' -57.7 NC_002794.1 + 114014 0.66 0.906489
Target:  5'- -aGGaGCGAcucguacaGGCGGGGCAGCgGCCGCc- -3'
miRNA:   3'- cgCC-CGCU--------CUGUCUUGUCG-CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 191490 0.66 0.900395
Target:  5'- aCGGGCGAucguccgccaccGAgAGGugcCAGCGCCggGCGUc -3'
miRNA:   3'- cGCCCGCU------------CUgUCUu--GUCGCGG--UGCA- -5'
10854 5' -57.7 NC_002794.1 + 142621 0.66 0.900395
Target:  5'- aCGGGCGAGuACAGcGCga-GCCGCa- -3'
miRNA:   3'- cGCCCGCUC-UGUCuUGucgCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 55322 0.66 0.900395
Target:  5'- cGCGGGCGgcuuccgaGGACccGGggUcGCGCC-CGa -3'
miRNA:   3'- -CGCCCGC--------UCUG--UCuuGuCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 31682 0.66 0.900395
Target:  5'- gGCGuGCGAGAU-GAACAGCcggGUCAUGUc -3'
miRNA:   3'- -CGCcCGCUCUGuCUUGUCG---CGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 144997 0.66 0.899773
Target:  5'- cCGGGCGuccgccuGGcGCAGcAGCuGCGCCACa- -3'
miRNA:   3'- cGCCCGC-------UC-UGUC-UUGuCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 86184 0.66 0.894081
Target:  5'- cCGGGcCGAGcCGGGACGGaugcuccggGCCGCGc -3'
miRNA:   3'- cGCCC-GCUCuGUCUUGUCg--------CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 72292 0.66 0.894081
Target:  5'- aGCGGGCGAucGCGucccGCAGCuGCCGCa- -3'
miRNA:   3'- -CGCCCGCUc-UGUcu--UGUCG-CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 86376 0.66 0.894081
Target:  5'- cCGGGcCGAGcCGGGACGGaugcuccggGCCGCGc -3'
miRNA:   3'- cGCCC-GCUCuGUCUUGUCg--------CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 93900 0.66 0.894081
Target:  5'- cGUGGaCG-GACAGGAguGCcuaGCCGCGUc -3'
miRNA:   3'- -CGCCcGCuCUGUCUUguCG---CGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 86544 0.66 0.894081
Target:  5'- cCGGGcCGAGcCGGGACGGaugcuccggGCCGCGc -3'
miRNA:   3'- cGCCC-GCUCuGUCUUGUCg--------CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 187322 0.66 0.894081
Target:  5'- cGCGGGguucCGcAGcCGGAGCAGCaGCC-CGUc -3'
miRNA:   3'- -CGCCC----GC-UCuGUCUUGUCG-CGGuGCA- -5'
10854 5' -57.7 NC_002794.1 + 48139 0.66 0.892144
Target:  5'- -aGGGCucgaagcccucgacGAGGCA--GCGGCGCCGCu- -3'
miRNA:   3'- cgCCCG--------------CUCUGUcuUGUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 182337 0.66 0.892144
Target:  5'- gGCGGGCGAG-CGGAcgggcgggcgggugACcgGGCG-CACGg -3'
miRNA:   3'- -CGCCCGCUCuGUCU--------------UG--UCGCgGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.