Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10854 | 5' | -57.7 | NC_002794.1 | + | 62492 | 0.66 | 0.887551 |
Target: 5'- cGCGaGUG-GACGGcgGGCGGCGCCGCc- -3' miRNA: 3'- -CGCcCGCuCUGUC--UUGUCGCGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 187322 | 0.66 | 0.894081 |
Target: 5'- cGCGGGguucCGcAGcCGGAGCAGCaGCC-CGUc -3' miRNA: 3'- -CGCCC----GC-UCuGUCUUGUCG-CGGuGCA- -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 86544 | 0.66 | 0.894081 |
Target: 5'- cCGGGcCGAGcCGGGACGGaugcuccggGCCGCGc -3' miRNA: 3'- cGCCC-GCUCuGUCUUGUCg--------CGGUGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 93900 | 0.66 | 0.894081 |
Target: 5'- cGUGGaCG-GACAGGAguGCcuaGCCGCGUc -3' miRNA: 3'- -CGCCcGCuCUGUCUUguCG---CGGUGCA- -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 86376 | 0.66 | 0.894081 |
Target: 5'- cCGGGcCGAGcCGGGACGGaugcuccggGCCGCGc -3' miRNA: 3'- cGCCC-GCUCuGUCUUGUCg--------CGGUGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 72292 | 0.66 | 0.894081 |
Target: 5'- aGCGGGCGAucGCGucccGCAGCuGCCGCa- -3' miRNA: 3'- -CGCCCGCUc-UGUcu--UGUCG-CGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 86184 | 0.66 | 0.894081 |
Target: 5'- cCGGGcCGAGcCGGGACGGaugcuccggGCCGCGc -3' miRNA: 3'- cGCCC-GCUCuGUCUUGUCg--------CGGUGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 48139 | 0.66 | 0.892144 |
Target: 5'- -aGGGCucgaagcccucgacGAGGCA--GCGGCGCCGCu- -3' miRNA: 3'- cgCCCG--------------CUCUGUcuUGUCGCGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 182337 | 0.66 | 0.892144 |
Target: 5'- gGCGGGCGAG-CGGAcgggcgggcgggugACcgGGCG-CACGg -3' miRNA: 3'- -CGCCCGCUCuGUCU--------------UG--UCGCgGUGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 144997 | 0.66 | 0.899773 |
Target: 5'- cCGGGCGuccgccuGGcGCAGcAGCuGCGCCACa- -3' miRNA: 3'- cGCCCGC-------UC-UGUC-UUGuCGCGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 191490 | 0.66 | 0.900395 |
Target: 5'- aCGGGCGAucguccgccaccGAgAGGugcCAGCGCCggGCGUc -3' miRNA: 3'- cGCCCGCU------------CUgUCUu--GUCGCGG--UGCA- -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 142621 | 0.66 | 0.900395 |
Target: 5'- aCGGGCGAGuACAGcGCga-GCCGCa- -3' miRNA: 3'- cGCCCGCUC-UGUCuUGucgCGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 105937 | 0.66 | 0.906489 |
Target: 5'- aCGGGCuGGACGcgcuguacGAACGGCugggggccGCCGCGg -3' miRNA: 3'- cGCCCGcUCUGU--------CUUGUCG--------CGGUGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 34265 | 0.66 | 0.906489 |
Target: 5'- gGCGGaccgcGCGcAGGCGGc-CAGCGCCAgCGa -3' miRNA: 3'- -CGCC-----CGC-UCUGUCuuGUCGCGGU-GCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 101031 | 0.66 | 0.906489 |
Target: 5'- cGCGGGcCGGGcGCGGGuCGGCcGCUACu- -3' miRNA: 3'- -CGCCC-GCUC-UGUCUuGUCG-CGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 190974 | 0.66 | 0.906489 |
Target: 5'- -gGGGC-AG-CAGAgcagGCAGCGCgGCGa -3' miRNA: 3'- cgCCCGcUCuGUCU----UGUCGCGgUGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 131732 | 0.66 | 0.906489 |
Target: 5'- aGCGGGCGAGAUcGcGCu-CGCCucGCGa -3' miRNA: 3'- -CGCCCGCUCUGuCuUGucGCGG--UGCa -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 114014 | 0.66 | 0.906489 |
Target: 5'- -aGGaGCGAcucguacaGGCGGGGCAGCgGCCGCc- -3' miRNA: 3'- cgCC-CGCU--------CUGUCUUGUCG-CGGUGca -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 31682 | 0.66 | 0.900395 |
Target: 5'- gGCGuGCGAGAU-GAACAGCcggGUCAUGUc -3' miRNA: 3'- -CGCcCGCUCUGuCUUGUCG---CGGUGCA- -5' |
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10854 | 5' | -57.7 | NC_002794.1 | + | 55322 | 0.66 | 0.900395 |
Target: 5'- cGCGGGCGgcuuccgaGGACccGGggUcGCGCC-CGa -3' miRNA: 3'- -CGCCCGC--------UCUG--UCuuGuCGCGGuGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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