miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 43126 1.08 0.003081
Target:  5'- gGCGGGCGAGACAGAACAGCGCCACGUu -3'
miRNA:   3'- -CGCCCGCUCUGUCUUGUCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 115973 0.82 0.158497
Target:  5'- gGgGGaGCGGGACggGGAGCGGCGCCGCGg -3'
miRNA:   3'- -CgCC-CGCUCUG--UCUUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 34847 0.81 0.202339
Target:  5'- aGCGGGCGu--CGGAGCgGGCGCCGCGg -3'
miRNA:   3'- -CGCCCGCucuGUCUUG-UCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 139118 0.79 0.244666
Target:  5'- cGCGGGCGAucACGGAGaCGGCGUCGCGg -3'
miRNA:   3'- -CGCCCGCUc-UGUCUU-GUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 139756 0.76 0.358596
Target:  5'- gGuuGGCGAGACAGAgguuggucauguACAGCGCCGgGg -3'
miRNA:   3'- -CgcCCGCUCUGUCU------------UGUCGCGGUgCa -5'
10854 5' -57.7 NC_002794.1 + 48579 0.76 0.366347
Target:  5'- aUGGGCGAGcCGGAGgAGCGgCGCGUc -3'
miRNA:   3'- cGCCCGCUCuGUCUUgUCGCgGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 107226 0.76 0.366347
Target:  5'- gGCGGcGCGcGACgGGGGCGGCGUCGCGg -3'
miRNA:   3'- -CGCC-CGCuCUG-UCUUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 103389 0.76 0.37342
Target:  5'- gGCGGGgguagaugaGGGGCAccacgucGGGCAGCGCCGCGUg -3'
miRNA:   3'- -CGCCCg--------CUCUGU-------CUUGUCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 20394 0.76 0.374212
Target:  5'- gGUGcGGCGGGACcgGGAGCGGgGCCACa- -3'
miRNA:   3'- -CGC-CCGCUCUG--UCUUGUCgCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 99572 0.76 0.381388
Target:  5'- cGCGGGCGAGGgGGGugcggagggcgcgGCGGCGgCGCGc -3'
miRNA:   3'- -CGCCCGCUCUgUCU-------------UGUCGCgGUGCa -5'
10854 5' -57.7 NC_002794.1 + 113673 0.75 0.39766
Target:  5'- aGCGcGGCGAG-CAGGcccgccaccgucgGCAGCGCCAgGUu -3'
miRNA:   3'- -CGC-CCGCUCuGUCU-------------UGUCGCGGUgCA- -5'
10854 5' -57.7 NC_002794.1 + 34732 0.75 0.432374
Target:  5'- cGCGGGCGGccGCAGAGC-GCGCgACGg -3'
miRNA:   3'- -CGCCCGCUc-UGUCUUGuCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 104888 0.75 0.440228
Target:  5'- aGCGGGCcggccgcGAGGCGccgugcugcucGAGCAgGCGCCGCGUc -3'
miRNA:   3'- -CGCCCG-------CUCUGU-----------CUUGU-CGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 110614 0.75 0.441105
Target:  5'- aGCGGaGCGGGAgcc-GCGGCGCCGCGg -3'
miRNA:   3'- -CGCC-CGCUCUgucuUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 54242 0.74 0.467885
Target:  5'- aGCGGcCGAGcgcGCGGuccACGGCGCCGCGUc -3'
miRNA:   3'- -CGCCcGCUC---UGUCu--UGUCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 123810 0.74 0.467885
Target:  5'- cGgGGGCGcGGACgagcaGGAGCGGCGCC-CGUc -3'
miRNA:   3'- -CgCCCGC-UCUG-----UCUUGUCGCGGuGCA- -5'
10854 5' -57.7 NC_002794.1 + 110481 0.74 0.495476
Target:  5'- gGgGGGUagaGAGGCGGuGGCGGCGCCugGa -3'
miRNA:   3'- -CgCCCG---CUCUGUC-UUGUCGCGGugCa -5'
10854 5' -57.7 NC_002794.1 + 106393 0.73 0.504837
Target:  5'- gGCGGGCGAacGGuCGGAccccgGCGGCGCCGgGg -3'
miRNA:   3'- -CGCCCGCU--CU-GUCU-----UGUCGCGGUgCa -5'
10854 5' -57.7 NC_002794.1 + 121749 0.73 0.504837
Target:  5'- gGC-GGCGAGACGGAgaugGCGGUGCC-CGa -3'
miRNA:   3'- -CGcCCGCUCUGUCU----UGUCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 188270 0.73 0.504837
Target:  5'- gGCGGGcCGGGuaGCGGAugcAgGGCGCCGCGc -3'
miRNA:   3'- -CGCCC-GCUC--UGUCU---UgUCGCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.