miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 101509 0.73 0.523781
Target:  5'- aGCGGuGCGGcacacgccGGCGGggUgcccGGCGCCACGUu -3'
miRNA:   3'- -CGCC-CGCU--------CUGUCuuG----UCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 10889 0.73 0.533355
Target:  5'- aCGGGCG-GGCGGAGguGUuucGCCACGg -3'
miRNA:   3'- cGCCCGCuCUGUCUUguCG---CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 44302 0.73 0.542991
Target:  5'- gGCcGGCGAGGCGGGG-AGCGaCCGCGa -3'
miRNA:   3'- -CGcCCGCUCUGUCUUgUCGC-GGUGCa -5'
10854 5' -57.7 NC_002794.1 + 141435 0.73 0.542991
Target:  5'- cGgGGGCGccggGGGCgccgGGAGCGGCGCgGCGUc -3'
miRNA:   3'- -CgCCCGC----UCUG----UCUUGUCGCGgUGCA- -5'
10854 5' -57.7 NC_002794.1 + 31038 0.73 0.542991
Target:  5'- -aGGGCcgacAGAUAGGGCAGCGgCACGg -3'
miRNA:   3'- cgCCCGc---UCUGUCUUGUCGCgGUGCa -5'
10854 5' -57.7 NC_002794.1 + 126682 0.72 0.582046
Target:  5'- -aGGGCccgaaucgGGGAgGGAGgGGCGCCGCGg -3'
miRNA:   3'- cgCCCG--------CUCUgUCUUgUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 142566 0.72 0.59191
Target:  5'- cCGGaUGGGAUAGAGCAGCGCgAUGg -3'
miRNA:   3'- cGCCcGCUCUGUCUUGUCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 14635 0.72 0.59191
Target:  5'- -gGGGcCGGGcACGGAGacgcCGGCGCCGCGg -3'
miRNA:   3'- cgCCC-GCUC-UGUCUU----GUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 111731 0.72 0.59191
Target:  5'- aGCGGGCGA-ACGcgcucgucGAGCuGGCGCCGCGc -3'
miRNA:   3'- -CGCCCGCUcUGU--------CUUG-UCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 31999 0.72 0.600811
Target:  5'- cGUGGGCGAGccgacGCAGAccaggcaggggacGCGGCGCUGCc- -3'
miRNA:   3'- -CGCCCGCUC-----UGUCU-------------UGUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 90993 0.71 0.621639
Target:  5'- cCGGGcCGAGGCGGAGCGG-GCCgACa- -3'
miRNA:   3'- cGCCC-GCUCUGUCUUGUCgCGG-UGca -5'
10854 5' -57.7 NC_002794.1 + 6669 0.71 0.621639
Target:  5'- cGCGcGGUGAGACAGAcuCAuCGCUACGc -3'
miRNA:   3'- -CGC-CCGCUCUGUCUu-GUcGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 137470 0.71 0.631574
Target:  5'- cGUGucGGCGGccucgUAGAGCAGCGCCACGg -3'
miRNA:   3'- -CGC--CCGCUcu---GUCUUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 67615 0.71 0.638528
Target:  5'- cUGGGCGAGACgauuuccccgaaacAGAACAGCcCgGCGUc -3'
miRNA:   3'- cGCCCGCUCUG--------------UCUUGUCGcGgUGCA- -5'
10854 5' -57.7 NC_002794.1 + 104532 0.71 0.641508
Target:  5'- gGUGGcGCGGGA-AGAGCuGCGCCAgCGUc -3'
miRNA:   3'- -CGCC-CGCUCUgUCUUGuCGCGGU-GCA- -5'
10854 5' -57.7 NC_002794.1 + 32872 0.71 0.651436
Target:  5'- gGCGGGCGGcGGCGGcGGCGGCGgCAUc- -3'
miRNA:   3'- -CGCCCGCU-CUGUC-UUGUCGCgGUGca -5'
10854 5' -57.7 NC_002794.1 + 92318 0.71 0.658377
Target:  5'- cGCGGGCGgcgggggcccgggcGGGCGGcuCGGCGUCAaCGUc -3'
miRNA:   3'- -CGCCCGC--------------UCUGUCuuGUCGCGGU-GCA- -5'
10854 5' -57.7 NC_002794.1 + 44350 0.71 0.661349
Target:  5'- cGCcGGCGAGACcgAGAGCgcggcgGGCGCgACGUc -3'
miRNA:   3'- -CGcCCGCUCUG--UCUUG------UCGCGgUGCA- -5'
10854 5' -57.7 NC_002794.1 + 111098 0.7 0.670252
Target:  5'- gGCGGGCccGGCGGGaccguggccgucgACGGCGCCGgCGg -3'
miRNA:   3'- -CGCCCGcuCUGUCU-------------UGUCGCGGU-GCa -5'
10854 5' -57.7 NC_002794.1 + 55287 0.7 0.67124
Target:  5'- gGCGGcGaCGAgGGCGGcGGCGGCGUCGCGg -3'
miRNA:   3'- -CGCC-C-GCU-CUGUC-UUGUCGCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.