miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 31899 0.66 0.887551
Target:  5'- aGCGGcGCGucGCuGAugAGCGCCgACa- -3'
miRNA:   3'- -CGCC-CGCucUGuCUugUCGCGG-UGca -5'
10854 5' -57.7 NC_002794.1 + 115926 0.66 0.887551
Target:  5'- uUGGcGCGGcGGCGGGcCGGCccGCCGCGUg -3'
miRNA:   3'- cGCC-CGCU-CUGUCUuGUCG--CGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 50766 0.66 0.887551
Target:  5'- cCGGGCGGcGGCGacggcgcgucucGGGCGGCGCCuccucgcccgGCGUc -3'
miRNA:   3'- cGCCCGCU-CUGU------------CUUGUCGCGG----------UGCA- -5'
10854 5' -57.7 NC_002794.1 + 186205 0.66 0.887551
Target:  5'- cGCGGGCcccaGGGCAGAugGCGGUccgggucccGCCACc- -3'
miRNA:   3'- -CGCCCGc---UCUGUCU--UGUCG---------CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 66960 0.66 0.887551
Target:  5'- gGCcGGCGAGucgcucgcCGGGGgAGCGUCGCGa -3'
miRNA:   3'- -CGcCCGCUCu-------GUCUUgUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 118665 0.66 0.887551
Target:  5'- cGUGGGCGcGACGcccGCGGCcGCCGCc- -3'
miRNA:   3'- -CGCCCGCuCUGUcu-UGUCG-CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 109156 0.66 0.887551
Target:  5'- gGCGGGgGAGAUGgcgacGAGCGGCgguaGCgGCGg -3'
miRNA:   3'- -CGCCCgCUCUGU-----CUUGUCG----CGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 62492 0.66 0.887551
Target:  5'- cGCGaGUG-GACGGcgGGCGGCGCCGCc- -3'
miRNA:   3'- -CGCcCGCuCUGUC--UUGUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 70232 0.66 0.884879
Target:  5'- gGCGGGCG-GccggccgccccgcaGCAGAcgcGCAGCgacggagGCCGCGa -3'
miRNA:   3'- -CGCCCGCuC--------------UGUCU---UGUCG-------CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 55412 0.66 0.880809
Target:  5'- gGCGGcCGAGGCGacccCGGCGuCCGCGUc -3'
miRNA:   3'- -CGCCcGCUCUGUcuu-GUCGC-GGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 178264 0.66 0.880809
Target:  5'- aGCGGGCugaccgGAGACGGGGuCGGUcgaGCgACGg -3'
miRNA:   3'- -CGCCCG------CUCUGUCUU-GUCG---CGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 32641 0.66 0.880809
Target:  5'- gGgGGGCGAcGAcCGGGgcgACGGCGCCGucccCGUc -3'
miRNA:   3'- -CgCCCGCU-CU-GUCU---UGUCGCGGU----GCA- -5'
10854 5' -57.7 NC_002794.1 + 181306 0.66 0.880809
Target:  5'- -aGGcCGAG-CAGGAuCAGCGCgACGUg -3'
miRNA:   3'- cgCCcGCUCuGUCUU-GUCGCGgUGCA- -5'
10854 5' -57.7 NC_002794.1 + 53051 0.66 0.880809
Target:  5'- cGCGGcuccaGCGuAGGCAGcGCcGCGCCGCc- -3'
miRNA:   3'- -CGCC-----CGC-UCUGUCuUGuCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 64829 0.66 0.880809
Target:  5'- aGCcGGCGccgacGACcGGACGGCGCgGCGg -3'
miRNA:   3'- -CGcCCGCu----CUGuCUUGUCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 101567 0.66 0.880809
Target:  5'- cGCcGGCGGGAguGc-CGGcCGCCGCGg -3'
miRNA:   3'- -CGcCCGCUCUguCuuGUC-GCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 91758 0.66 0.880809
Target:  5'- gGCGGGCGGcaccgcGCAGGACGG-GCUGCu- -3'
miRNA:   3'- -CGCCCGCUc-----UGUCUUGUCgCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 108388 0.66 0.880809
Target:  5'- aGCGGG-GAG-CGGAggcuccggcgGCGGCGCCcaccACGg -3'
miRNA:   3'- -CGCCCgCUCuGUCU----------UGUCGCGG----UGCa -5'
10854 5' -57.7 NC_002794.1 + 147075 0.66 0.880809
Target:  5'- cGCGGGCGcccgguccaaGGACgaAGGcguCGGCGCC-CGg -3'
miRNA:   3'- -CGCCCGC----------UCUG--UCUu--GUCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 82143 0.66 0.873858
Target:  5'- cGUGGGCGGacacccggcccGACGGcucCGGCGCC-CGa -3'
miRNA:   3'- -CGCCCGCU-----------CUGUCuu-GUCGCGGuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.