miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 122200 0.66 0.873858
Target:  5'- aCGcGGCGAaGCGGugcCGGCGCCGCu- -3'
miRNA:   3'- cGC-CCGCUcUGUCuu-GUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 82143 0.66 0.873858
Target:  5'- cGUGGGCGGacacccggcccGACGGcucCGGCGCC-CGa -3'
miRNA:   3'- -CGCCCGCU-----------CUGUCuu-GUCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 142398 0.66 0.873858
Target:  5'- gGCGGuGC-AGGCGGcgucGGCGGCGCCGgGc -3'
miRNA:   3'- -CGCC-CGcUCUGUC----UUGUCGCGGUgCa -5'
10854 5' -57.7 NC_002794.1 + 130148 0.67 0.866704
Target:  5'- cGCGGcGCGAGcGCGGGAUcacgcgcgcgagAGCcGCCGCa- -3'
miRNA:   3'- -CGCC-CGCUC-UGUCUUG------------UCG-CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 103590 0.67 0.866704
Target:  5'- aGCGGuCG-GGCAGGcaGCGGCGgCACGc -3'
miRNA:   3'- -CGCCcGCuCUGUCU--UGUCGCgGUGCa -5'
10854 5' -57.7 NC_002794.1 + 95861 0.67 0.866704
Target:  5'- gGCGGGCGGGcCGuuuCAGUGUgGCGa -3'
miRNA:   3'- -CGCCCGCUCuGUcuuGUCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 33705 0.67 0.865977
Target:  5'- gGCGGGCGAgccgcuggucuacGACGaGACGGUGCuguaCACGa -3'
miRNA:   3'- -CGCCCGCU-------------CUGUcUUGUCGCG----GUGCa -5'
10854 5' -57.7 NC_002794.1 + 107153 0.67 0.862316
Target:  5'- gGCGcccccGGCGAGggccgccgcuacgcgGCGGAGcCGGCGCCGCc- -3'
miRNA:   3'- -CGC-----CCGCUC---------------UGUCUU-GUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 95561 0.67 0.859351
Target:  5'- aGCuGGGCGAGGacGAGCGGCuCUAUGUc -3'
miRNA:   3'- -CG-CCCGCUCUguCUUGUCGcGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 108188 0.67 0.859351
Target:  5'- cGCGGacuGCGAG-CGGcGCuGCGCCGCc- -3'
miRNA:   3'- -CGCC---CGCUCuGUCuUGuCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 115050 0.67 0.859351
Target:  5'- cCGGGCG--GCGGGcgGCAGCGCCGu-- -3'
miRNA:   3'- cGCCCGCucUGUCU--UGUCGCGGUgca -5'
10854 5' -57.7 NC_002794.1 + 101646 0.67 0.851804
Target:  5'- cGUGGGCG-GGCGGGcgGCGGUuaGCC-CGUc -3'
miRNA:   3'- -CGCCCGCuCUGUCU--UGUCG--CGGuGCA- -5'
10854 5' -57.7 NC_002794.1 + 56271 0.67 0.851804
Target:  5'- cCGGGcCGAGcagcaggcgGCAGAGCAcgauGCGCgCGCGg -3'
miRNA:   3'- cGCCC-GCUC---------UGUCUUGU----CGCG-GUGCa -5'
10854 5' -57.7 NC_002794.1 + 131169 0.67 0.851039
Target:  5'- aCGGcGCccgucucgagccgGAGACAGcACGGCGCCGgGg -3'
miRNA:   3'- cGCC-CG-------------CUCUGUCuUGUCGCGGUgCa -5'
10854 5' -57.7 NC_002794.1 + 114697 0.67 0.851039
Target:  5'- cCGGaccuccuGCGAGACGGAcgGCGGCgGCgGCGg -3'
miRNA:   3'- cGCC-------CGCUCUGUCU--UGUCG-CGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 37313 0.67 0.84407
Target:  5'- cGCGGGgcaGaAGACGGAGCGGUgggGCC-CGg -3'
miRNA:   3'- -CGCCCg--C-UCUGUCUUGUCG---CGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 89678 0.67 0.84407
Target:  5'- gGCGGuGgGAGggcuguucGCGGcgaauauaAACGGCGCCGCGg -3'
miRNA:   3'- -CGCC-CgCUC--------UGUC--------UUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 96906 0.67 0.84407
Target:  5'- uCGGGCGGagguGGCGGA--GGCGCCgGCGa -3'
miRNA:   3'- cGCCCGCU----CUGUCUugUCGCGG-UGCa -5'
10854 5' -57.7 NC_002794.1 + 105887 0.67 0.843286
Target:  5'- gGgGGGUGGGAgAGGagucgccgcggcgGCGGCGCUACc- -3'
miRNA:   3'- -CgCCCGCUCUgUCU-------------UGUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 37272 0.67 0.843286
Target:  5'- gGCGGGCGc-GCGGGcGCGGCGUacaacgaCACGUa -3'
miRNA:   3'- -CGCCCGCucUGUCU-UGUCGCG-------GUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.