miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 4791 0.69 0.757927
Target:  5'- cGUGGGgGGGuauugcguACGGAGC-GCGUCGCGUu -3'
miRNA:   3'- -CGCCCgCUC--------UGUCUUGuCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 6669 0.71 0.621639
Target:  5'- cGCGcGGUGAGACAGAcuCAuCGCUACGc -3'
miRNA:   3'- -CGC-CCGCUCUGUCUu-GUcGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 10889 0.73 0.533355
Target:  5'- aCGGGCG-GGCGGAGguGUuucGCCACGg -3'
miRNA:   3'- cGCCCGCuCUGUCUUguCG---CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 14455 0.7 0.710423
Target:  5'- cGCGGGCGAccgugucGAGCGgcGCGCCGCGc -3'
miRNA:   3'- -CGCCCGCUcugu---CUUGU--CGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 14635 0.72 0.59191
Target:  5'- -gGGGcCGGGcACGGAGacgcCGGCGCCGCGg -3'
miRNA:   3'- cgCCC-GCUC-UGUCUU----GUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 20394 0.76 0.374212
Target:  5'- gGUGcGGCGGGACcgGGAGCGGgGCCACa- -3'
miRNA:   3'- -CGC-CCGCUCUG--UCUUGUCgCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 31038 0.73 0.542991
Target:  5'- -aGGGCcgacAGAUAGGGCAGCGgCACGg -3'
miRNA:   3'- cgCCCGc---UCUGUCUUGUCGCgGUGCa -5'
10854 5' -57.7 NC_002794.1 + 31682 0.66 0.900395
Target:  5'- gGCGuGCGAGAU-GAACAGCcggGUCAUGUc -3'
miRNA:   3'- -CGCcCGCUCUGuCUUGUCG---CGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 31899 0.66 0.887551
Target:  5'- aGCGGcGCGucGCuGAugAGCGCCgACa- -3'
miRNA:   3'- -CGCC-CGCucUGuCUugUCGCGG-UGca -5'
10854 5' -57.7 NC_002794.1 + 31999 0.72 0.600811
Target:  5'- cGUGGGCGAGccgacGCAGAccaggcaggggacGCGGCGCUGCc- -3'
miRNA:   3'- -CGCCCGCUC-----UGUCU-------------UGUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 32641 0.66 0.880809
Target:  5'- gGgGGGCGAcGAcCGGGgcgACGGCGCCGucccCGUc -3'
miRNA:   3'- -CgCCCGCU-CU-GUCU---UGUCGCGGU----GCA- -5'
10854 5' -57.7 NC_002794.1 + 32872 0.71 0.651436
Target:  5'- gGCGGGCGGcGGCGGcGGCGGCGgCAUc- -3'
miRNA:   3'- -CGCCCGCU-CUGUC-UUGUCGCgGUGca -5'
10854 5' -57.7 NC_002794.1 + 33705 0.67 0.865977
Target:  5'- gGCGGGCGAgccgcuggucuacGACGaGACGGUGCuguaCACGa -3'
miRNA:   3'- -CGCCCGCU-------------CUGUcUUGUCGCG----GUGCa -5'
10854 5' -57.7 NC_002794.1 + 34265 0.66 0.906489
Target:  5'- gGCGGaccgcGCGcAGGCGGc-CAGCGCCAgCGa -3'
miRNA:   3'- -CGCC-----CGC-UCUGUCuuGUCGCGGU-GCa -5'
10854 5' -57.7 NC_002794.1 + 34732 0.75 0.432374
Target:  5'- cGCGGGCGGccGCAGAGC-GCGCgACGg -3'
miRNA:   3'- -CGCCCGCUc-UGUCUUGuCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 34847 0.81 0.202339
Target:  5'- aGCGGGCGu--CGGAGCgGGCGCCGCGg -3'
miRNA:   3'- -CGCCCGCucuGUCUUG-UCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 37084 0.67 0.828063
Target:  5'- aGCGGGCgccguuGAGcCGGuacucguuCAGCGUCACGg -3'
miRNA:   3'- -CGCCCG------CUCuGUCuu------GUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 37272 0.67 0.843286
Target:  5'- gGCGGGCGc-GCGGGcGCGGCGUacaacgaCACGUa -3'
miRNA:   3'- -CGCCCGCucUGUCU-UGUCGCG-------GUGCA- -5'
10854 5' -57.7 NC_002794.1 + 37313 0.67 0.84407
Target:  5'- cGCGGGgcaGaAGACGGAGCGGUgggGCC-CGg -3'
miRNA:   3'- -CGCCCg--C-UCUGUCUUGUCG---CGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 37745 0.67 0.836154
Target:  5'- cGCcGGCGGcGGCGcGGCGGCGCCGgCGg -3'
miRNA:   3'- -CGcCCGCU-CUGUcUUGUCGCGGU-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.