miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 38440 0.7 0.680116
Target:  5'- gGCGGGCcGGACuGAGgAGCcggcgcgGCCGCGg -3'
miRNA:   3'- -CGCCCGcUCUGuCUUgUCG-------CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 40114 0.67 0.836154
Target:  5'- cGgGGGCGc-GCgAGAGCGGagaGCCACGg -3'
miRNA:   3'- -CgCCCGCucUG-UCUUGUCg--CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 43126 1.08 0.003081
Target:  5'- gGCGGGCGAGACAGAACAGCGCCACGUu -3'
miRNA:   3'- -CGCCCGCUCUGUCUUGUCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 44302 0.73 0.542991
Target:  5'- gGCcGGCGAGGCGGGG-AGCGaCCGCGa -3'
miRNA:   3'- -CGcCCGCUCUGUCUUgUCGC-GGUGCa -5'
10854 5' -57.7 NC_002794.1 + 44350 0.71 0.661349
Target:  5'- cGCcGGCGAGACcgAGAGCgcggcgGGCGCgACGUc -3'
miRNA:   3'- -CGcCCGCUCUG--UCUUG------UCGCGgUGCA- -5'
10854 5' -57.7 NC_002794.1 + 45665 0.68 0.784347
Target:  5'- cGCGGGCcgcagaaGAGcagcCAGAGCAGgGCCucgACGUc -3'
miRNA:   3'- -CGCCCG-------CUCu---GUCUUGUCgCGG---UGCA- -5'
10854 5' -57.7 NC_002794.1 + 46314 0.69 0.739181
Target:  5'- aGCGcGGCGGcGACGGcGCcGuCGCCGCGg -3'
miRNA:   3'- -CGC-CCGCU-CUGUCuUGuC-GCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 48139 0.66 0.892144
Target:  5'- -aGGGCucgaagcccucgacGAGGCA--GCGGCGCCGCu- -3'
miRNA:   3'- cgCCCG--------------CUCUGUcuUGUCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 48216 0.68 0.776254
Target:  5'- -aGGuaGAGGCAGAGCAGgcggcCGCCAuCGUu -3'
miRNA:   3'- cgCCcgCUCUGUCUUGUC-----GCGGU-GCA- -5'
10854 5' -57.7 NC_002794.1 + 48475 0.7 0.710423
Target:  5'- -aGGGCGAaGCcgccGGGCAGCGcCCACGa -3'
miRNA:   3'- cgCCCGCUcUGu---CUUGUCGC-GGUGCa -5'
10854 5' -57.7 NC_002794.1 + 48579 0.76 0.366347
Target:  5'- aUGGGCGAGcCGGAGgAGCGgCGCGUc -3'
miRNA:   3'- cGCCCGCUCuGUCUUgUCGCgGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 49600 0.67 0.836154
Target:  5'- cGCGaucGGCGAcGGCGGGcgccgGCGGCGCCuCGc -3'
miRNA:   3'- -CGC---CCGCU-CUGUCU-----UGUCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 50766 0.66 0.887551
Target:  5'- cCGGGCGGcGGCGacggcgcgucucGGGCGGCGCCuccucgcccgGCGUc -3'
miRNA:   3'- cGCCCGCU-CUGU------------CUUGUCGCGG----------UGCA- -5'
10854 5' -57.7 NC_002794.1 + 51266 0.7 0.690924
Target:  5'- gGCGGGCcggGAGGCAGGcGCGGC-CCGCc- -3'
miRNA:   3'- -CGCCCG---CUCUGUCU-UGUCGcGGUGca -5'
10854 5' -57.7 NC_002794.1 + 53051 0.66 0.880809
Target:  5'- cGCGGcuccaGCGuAGGCAGcGCcGCGCCGCc- -3'
miRNA:   3'- -CGCC-----CGC-UCUGUCuUGuCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 54242 0.74 0.467885
Target:  5'- aGCGGcCGAGcgcGCGGuccACGGCGCCGCGUc -3'
miRNA:   3'- -CGCCcGCUC---UGUCu--UGUCGCGGUGCA- -5'
10854 5' -57.7 NC_002794.1 + 55177 0.68 0.819805
Target:  5'- aGCGGGCGAcucgaggcGGCGGcccuaacacCGGCGCgGCGg -3'
miRNA:   3'- -CGCCCGCU--------CUGUCuu-------GUCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 55287 0.7 0.67124
Target:  5'- gGCGGcGaCGAgGGCGGcGGCGGCGUCGCGg -3'
miRNA:   3'- -CGCC-C-GCU-CUGUC-UUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 55322 0.66 0.900395
Target:  5'- cGCGGGCGgcuuccgaGGACccGGggUcGCGCC-CGa -3'
miRNA:   3'- -CGCCCGC--------UCUG--UCuuGuCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 55412 0.66 0.880809
Target:  5'- gGCGGcCGAGGCGacccCGGCGuCCGCGUc -3'
miRNA:   3'- -CGCCcGCUCUGUcuu-GUCGC-GGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.