miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10854 5' -57.7 NC_002794.1 + 194973 0.68 0.78524
Target:  5'- cGCcGGCucGuACAGGcACAGCGCCGCGc -3'
miRNA:   3'- -CGcCCGcuC-UGUCU-UGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 194125 0.69 0.738234
Target:  5'- cGCGcacGGCuGAGGCAGcggccgcAGCAGCGcCCGCGa -3'
miRNA:   3'- -CGC---CCG-CUCUGUC-------UUGUCGC-GGUGCa -5'
10854 5' -57.7 NC_002794.1 + 193342 0.67 0.836154
Target:  5'- gGCGGucguGCGAGcaacACAGcAGcCGGUGCCACGg -3'
miRNA:   3'- -CGCC----CGCUC----UGUC-UU-GUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 193071 0.7 0.720083
Target:  5'- uGCGGGCcgucgcGGGACAGccgcAGCAGCGUCGUGa -3'
miRNA:   3'- -CGCCCG------CUCUGUC----UUGUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 191996 0.69 0.757927
Target:  5'- aCGGcCGGGACGGuAGCGGCggugGCCGCGg -3'
miRNA:   3'- cGCCcGCUCUGUC-UUGUCG----CGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 191490 0.66 0.900395
Target:  5'- aCGGGCGAucguccgccaccGAgAGGugcCAGCGCCggGCGUc -3'
miRNA:   3'- cGCCCGCU------------CUgUCUu--GUCGCGG--UGCA- -5'
10854 5' -57.7 NC_002794.1 + 190974 0.66 0.906489
Target:  5'- -gGGGC-AG-CAGAgcagGCAGCGCgGCGa -3'
miRNA:   3'- cgCCCGcUCuGUCU----UGUCGCGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 188270 0.73 0.504837
Target:  5'- gGCGGGcCGGGuaGCGGAugcAgGGCGCCGCGc -3'
miRNA:   3'- -CGCCC-GCUC--UGUCU---UgUCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 187322 0.66 0.894081
Target:  5'- cGCGGGguucCGcAGcCGGAGCAGCaGCC-CGUc -3'
miRNA:   3'- -CGCCC----GC-UCuGUCUUGUCG-CGGuGCA- -5'
10854 5' -57.7 NC_002794.1 + 186205 0.66 0.887551
Target:  5'- cGCGGGCcccaGGGCAGAugGCGGUccgggucccGCCACc- -3'
miRNA:   3'- -CGCCCGc---UCUGUCU--UGUCG---------CGGUGca -5'
10854 5' -57.7 NC_002794.1 + 184598 0.68 0.802814
Target:  5'- cGCGGccGCGGGAucggcaacggcCAGcGGCAGCGuCCACGa -3'
miRNA:   3'- -CGCC--CGCUCU-----------GUC-UUGUCGC-GGUGCa -5'
10854 5' -57.7 NC_002794.1 + 183579 0.7 0.689943
Target:  5'- aCGGGCcuuuaauacggugGGGGCGGAGgGGgGCCGCGc -3'
miRNA:   3'- cGCCCG-------------CUCUGUCUUgUCgCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 183426 0.69 0.739181
Target:  5'- aGCGGgaGCGGGAgCGGGAcCGGCGCC-CGc -3'
miRNA:   3'- -CGCC--CGCUCU-GUCUU-GUCGCGGuGCa -5'
10854 5' -57.7 NC_002794.1 + 182519 0.68 0.782557
Target:  5'- aGCGGagcaccguccaccaGCGcGGCAGcGACuGCGCCGCGg -3'
miRNA:   3'- -CGCC--------------CGCuCUGUC-UUGuCGCGGUGCa -5'
10854 5' -57.7 NC_002794.1 + 182337 0.66 0.892144
Target:  5'- gGCGGGCGAG-CGGAcgggcgggcgggugACcgGGCG-CACGg -3'
miRNA:   3'- -CGCCCGCUCuGUCU--------------UG--UCGCgGUGCa -5'
10854 5' -57.7 NC_002794.1 + 181306 0.66 0.880809
Target:  5'- -aGGcCGAG-CAGGAuCAGCGCgACGUg -3'
miRNA:   3'- cgCCcGCUCuGUCUU-GUCGCGgUGCA- -5'
10854 5' -57.7 NC_002794.1 + 180825 0.69 0.767147
Target:  5'- cUGGGCGGGGaGGAGCccGGCGUCACc- -3'
miRNA:   3'- cGCCCGCUCUgUCUUG--UCGCGGUGca -5'
10854 5' -57.7 NC_002794.1 + 178264 0.66 0.880809
Target:  5'- aGCGGGCugaccgGAGACGGGGuCGGUcgaGCgACGg -3'
miRNA:   3'- -CGCCCG------CUCUGUCUU-GUCG---CGgUGCa -5'
10854 5' -57.7 NC_002794.1 + 156473 0.69 0.733485
Target:  5'- gGCGGGgGAcGACGGGGCGGCuuuaccgguuuagcgGCC-CGUu -3'
miRNA:   3'- -CGCCCgCU-CUGUCUUGUCG---------------CGGuGCA- -5'
10854 5' -57.7 NC_002794.1 + 148136 0.69 0.767147
Target:  5'- cGCGGGgccgcCGGGGCgAGGGCGGuCGCgACGg -3'
miRNA:   3'- -CGCCC-----GCUCUG-UCUUGUC-GCGgUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.