miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10855 3' -55.9 NC_002794.1 + 37503 0.66 0.92437
Target:  5'- cGCAcgcGCGUGUGGucGCGcagcaCCACGUCCc- -3'
miRNA:   3'- uUGU---UGCACACC--CGCa----GGUGCAGGuu -5'
10855 3' -55.9 NC_002794.1 + 115867 0.67 0.900752
Target:  5'- cGCGAgGgguccgGGGCGUCCgggGCGUCCGc -3'
miRNA:   3'- uUGUUgCaca---CCCGCAGG---UGCAGGUu -5'
10855 3' -55.9 NC_002794.1 + 53586 0.68 0.858459
Target:  5'- aAACAcCGUGUcGGCGUCgGCGUCa-- -3'
miRNA:   3'- -UUGUuGCACAcCCGCAGgUGCAGguu -5'
10855 3' -55.9 NC_002794.1 + 147976 0.69 0.808858
Target:  5'- uGCAGCGUGUGgcGGUGUCCcugcuggccuuCGUCCGc -3'
miRNA:   3'- uUGUUGCACAC--CCGCAGGu----------GCAGGUu -5'
10855 3' -55.9 NC_002794.1 + 59910 0.69 0.79096
Target:  5'- cGCAGCGacaUGGGCGcCCGCGUgCAGg -3'
miRNA:   3'- uUGUUGCac-ACCCGCaGGUGCAgGUU- -5'
10855 3' -55.9 NC_002794.1 + 104467 0.7 0.74387
Target:  5'- gGGCGGCGUGUgcaggaugcGGGCGgCCACGgcggCCGGg -3'
miRNA:   3'- -UUGUUGCACA---------CCCGCaGGUGCa---GGUU- -5'
10855 3' -55.9 NC_002794.1 + 113645 0.71 0.71437
Target:  5'- gAGCAGCGgcccGGCGUCCucgGCGUCCAGc -3'
miRNA:   3'- -UUGUUGCacacCCGCAGG---UGCAGGUU- -5'
10855 3' -55.9 NC_002794.1 + 42711 1.04 0.007085
Target:  5'- aAACAACGUGUGGGCGUCCACGUCCAAg -3'
miRNA:   3'- -UUGUUGCACACCCGCAGGUGCAGGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.