Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10855 | 3' | -55.9 | NC_002794.1 | + | 37503 | 0.66 | 0.92437 |
Target: 5'- cGCAcgcGCGUGUGGucGCGcagcaCCACGUCCc- -3' miRNA: 3'- uUGU---UGCACACC--CGCa----GGUGCAGGuu -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 115867 | 0.67 | 0.900752 |
Target: 5'- cGCGAgGgguccgGGGCGUCCgggGCGUCCGc -3' miRNA: 3'- uUGUUgCaca---CCCGCAGG---UGCAGGUu -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 53586 | 0.68 | 0.858459 |
Target: 5'- aAACAcCGUGUcGGCGUCgGCGUCa-- -3' miRNA: 3'- -UUGUuGCACAcCCGCAGgUGCAGguu -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 147976 | 0.69 | 0.808858 |
Target: 5'- uGCAGCGUGUGgcGGUGUCCcugcuggccuuCGUCCGc -3' miRNA: 3'- uUGUUGCACAC--CCGCAGGu----------GCAGGUu -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 59910 | 0.69 | 0.79096 |
Target: 5'- cGCAGCGacaUGGGCGcCCGCGUgCAGg -3' miRNA: 3'- uUGUUGCac-ACCCGCaGGUGCAgGUU- -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 104467 | 0.7 | 0.74387 |
Target: 5'- gGGCGGCGUGUgcaggaugcGGGCGgCCACGgcggCCGGg -3' miRNA: 3'- -UUGUUGCACA---------CCCGCaGGUGCa---GGUU- -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 113645 | 0.71 | 0.71437 |
Target: 5'- gAGCAGCGgcccGGCGUCCucgGCGUCCAGc -3' miRNA: 3'- -UUGUUGCacacCCGCAGG---UGCAGGUU- -5' |
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10855 | 3' | -55.9 | NC_002794.1 | + | 42711 | 1.04 | 0.007085 |
Target: 5'- aAACAACGUGUGGGCGUCCACGUCCAAg -3' miRNA: 3'- -UUGUUGCACACCCGCAGGUGCAGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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