miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10855 5' -53.4 NC_002794.1 + 152572 0.66 0.980554
Target:  5'- cGCUucaccGCCGCGgcGGCCgccacguccCUGCGGCg -3'
miRNA:   3'- uCGAc----UGGCGCuuCUGGaa-------GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 50360 0.66 0.980554
Target:  5'- cGCcaUGACCGCGGAG-CCggCcgGCAGg -3'
miRNA:   3'- uCG--ACUGGCGCUUCuGGaaGa-CGUUg -5'
10855 5' -53.4 NC_002794.1 + 96808 0.66 0.980554
Target:  5'- cGCUGAUCGCGAG--UCUagUCUGguACc -3'
miRNA:   3'- uCGACUGGCGCUUcuGGA--AGACguUG- -5'
10855 5' -53.4 NC_002794.1 + 116829 0.66 0.980554
Target:  5'- cGCUcuggucccggGACgCGCGGuGGAUCUUCaUGCGGCg -3'
miRNA:   3'- uCGA----------CUG-GCGCU-UCUGGAAG-ACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 119523 0.66 0.980554
Target:  5'- gAGCcGGCCGCGGAccCCUcgUCcGCGGCc -3'
miRNA:   3'- -UCGaCUGGCGCUUcuGGA--AGaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 129077 0.66 0.979898
Target:  5'- cGGCUGGCgGCGGaccguccgguggguGGACUg---GCGACg -3'
miRNA:   3'- -UCGACUGgCGCU--------------UCUGGaagaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 186961 0.66 0.975869
Target:  5'- cGCUGGCCGCc---GCCUcCaGCAGCg -3'
miRNA:   3'- uCGACUGGCGcuucUGGAaGaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 145866 0.66 0.975869
Target:  5'- cGCcgagGGCCGCGAccGGACCgcgagaaGCGGCg -3'
miRNA:   3'- uCGa---CUGGCGCU--UCUGGaaga---CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 115420 0.66 0.975869
Target:  5'- cGGCaGACCGUcAGGACCUuggUCaggaGCAGCu -3'
miRNA:   3'- -UCGaCUGGCGcUUCUGGA---AGa---CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 21879 0.66 0.970407
Target:  5'- aGGCcGGCCGCGggGuguCCgcggcCUGCGu- -3'
miRNA:   3'- -UCGaCUGGCGCuuCu--GGaa---GACGUug -5'
10855 5' -53.4 NC_002794.1 + 114349 0.67 0.967367
Target:  5'- cGGCUcguccGCCGCcAGGGCCggCUGCAGg -3'
miRNA:   3'- -UCGAc----UGGCGcUUCUGGaaGACGUUg -5'
10855 5' -53.4 NC_002794.1 + 112978 0.67 0.967367
Target:  5'- cGGaCUG-CCGCuu-GGCCUcCUGCAGCu -3'
miRNA:   3'- -UC-GACuGGCGcuuCUGGAaGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 134693 0.67 0.964112
Target:  5'- uGGCUcGACCGCcucuGggGGCCggagUUGCGGg -3'
miRNA:   3'- -UCGA-CUGGCG----CuuCUGGaa--GACGUUg -5'
10855 5' -53.4 NC_002794.1 + 37380 0.67 0.964112
Target:  5'- gGGCgcaGGCCGuCGAAGucgcuguagagcGCCcgCUGCAGCc -3'
miRNA:   3'- -UCGa--CUGGC-GCUUC------------UGGaaGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 149920 0.67 0.964112
Target:  5'- gGGCUacGACCGCGAccggcAGACCgucuacugucUCUGUcggGACg -3'
miRNA:   3'- -UCGA--CUGGCGCU-----UCUGGa---------AGACG---UUG- -5'
10855 5' -53.4 NC_002794.1 + 179561 0.67 0.963775
Target:  5'- cAGCUgcucgaaGACCGauuuGGAGGCCUUCUugcGCAAg -3'
miRNA:   3'- -UCGA-------CUGGCg---CUUCUGGAAGA---CGUUg -5'
10855 5' -53.4 NC_002794.1 + 123266 0.67 0.960637
Target:  5'- cGGCUGguccggGCCGCGGucgucgcgggAGACCUgCUGCu-- -3'
miRNA:   3'- -UCGAC------UGGCGCU----------UCUGGAaGACGuug -5'
10855 5' -53.4 NC_002794.1 + 140522 0.67 0.960637
Target:  5'- cGCUGGCgGC--AGGCCcUCggGCAACa -3'
miRNA:   3'- uCGACUGgCGcuUCUGGaAGa-CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 55742 0.67 0.956936
Target:  5'- cGGC--ACCGCGAGccacgUCUUCUGCAGCu -3'
miRNA:   3'- -UCGacUGGCGCUUcu---GGAAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 138988 0.67 0.956936
Target:  5'- uGGCgGGCCugcGCGAAGGCUU--UGCGGCu -3'
miRNA:   3'- -UCGaCUGG---CGCUUCUGGAagACGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.