miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10855 5' -53.4 NC_002794.1 + 42748 1.1 0.005094
Target:  5'- gAGCUGACCGCGAAGACCUUCUGCAACu -3'
miRNA:   3'- -UCGACUGGCGCUUCUGGAAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 148320 0.79 0.410618
Target:  5'- cGGCcGACCGCGGuucGACCUgcguuggcagcugcUCUGCAACa -3'
miRNA:   3'- -UCGaCUGGCGCUu--CUGGA--------------AGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 92710 0.75 0.614248
Target:  5'- cGCUGACCGUGucGAgCCUgucgcgcuggcugCUGCAGCa -3'
miRNA:   3'- uCGACUGGCGCuuCU-GGAa------------GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 120060 0.75 0.639113
Target:  5'- uGGC-GGCCGCGGAGGCCgac-GCGGCg -3'
miRNA:   3'- -UCGaCUGGCGCUUCUGGaagaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 116000 0.74 0.680423
Target:  5'- cGgaGACCGCGGAGACCgcggugGCGAUu -3'
miRNA:   3'- uCgaCUGGCGCUUCUGGaaga--CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 138916 0.73 0.711008
Target:  5'- uGCUGACCGCGGcGGAUggUCUGCcgguGCg -3'
miRNA:   3'- uCGACUGGCGCU-UCUGgaAGACGu---UG- -5'
10855 5' -53.4 NC_002794.1 + 104891 0.73 0.75078
Target:  5'- gGGCcGGCCGCGAGGcGCCgugCUGCucgAGCa -3'
miRNA:   3'- -UCGaCUGGCGCUUC-UGGaa-GACG---UUG- -5'
10855 5' -53.4 NC_002794.1 + 155412 0.72 0.77952
Target:  5'- uGCUcGACCGCcgucAAGGCUUUCUGCAc- -3'
miRNA:   3'- uCGA-CUGGCGc---UUCUGGAAGACGUug -5'
10855 5' -53.4 NC_002794.1 + 149690 0.72 0.77952
Target:  5'- cGaCUGGCCGCGggGGCCgcCUgGCGGg -3'
miRNA:   3'- uC-GACUGGCGCuuCUGGaaGA-CGUUg -5'
10855 5' -53.4 NC_002794.1 + 150734 0.72 0.788842
Target:  5'- cGGCUGACCGCGuucccGugCg--UGCAGCg -3'
miRNA:   3'- -UCGACUGGCGCuu---CugGaagACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 74193 0.72 0.798018
Target:  5'- cGCgacACCGCGAAGACCUcuacCUGCucAACg -3'
miRNA:   3'- uCGac-UGGCGCUUCUGGAa---GACG--UUG- -5'
10855 5' -53.4 NC_002794.1 + 147148 0.71 0.807042
Target:  5'- cGGCcccggGGCCGCGAGGGCCagCUGgacCGACu -3'
miRNA:   3'- -UCGa----CUGGCGCUUCUGGaaGAC---GUUG- -5'
10855 5' -53.4 NC_002794.1 + 108204 0.71 0.824592
Target:  5'- cGCUGcgccGCCGCGccGGCCUcgcgccCUGCGGCa -3'
miRNA:   3'- uCGAC----UGGCGCuuCUGGAa-----GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 36851 0.71 0.824592
Target:  5'- cGUagGugUGCGGAGACCgccaCUGCAGCc -3'
miRNA:   3'- uCGa-CugGCGCUUCUGGaa--GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 89511 0.71 0.841424
Target:  5'- cAGgaGACCGCGuAGGCCagagUCggcggagGCAGCa -3'
miRNA:   3'- -UCgaCUGGCGCuUCUGGa---AGa------CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 70270 0.7 0.857478
Target:  5'- cGgaGGCCGCGAAGGCCggagaGCAGg -3'
miRNA:   3'- uCgaCUGGCGCUUCUGGaaga-CGUUg -5'
10855 5' -53.4 NC_002794.1 + 60719 0.7 0.857478
Target:  5'- -cCUGAUCGCcGAGACgCUgccgCUGCAGCa -3'
miRNA:   3'- ucGACUGGCGcUUCUG-GAa---GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 91157 0.7 0.865194
Target:  5'- uGCUGggcGCCGUGGAGGCCUUCa--AGCu -3'
miRNA:   3'- uCGAC---UGGCGCUUCUGGAAGacgUUG- -5'
10855 5' -53.4 NC_002794.1 + 130528 0.7 0.865194
Target:  5'- gGGCUGACCGUGAcGAUUUcCgacGCGGCg -3'
miRNA:   3'- -UCGACUGGCGCUuCUGGAaGa--CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 68136 0.7 0.865194
Target:  5'- uGCUGAuCCGCG-AGACC--CUGCAcaACa -3'
miRNA:   3'- uCGACU-GGCGCuUCUGGaaGACGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.