miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10855 5' -53.4 NC_002794.1 + 92315 0.67 0.953005
Target:  5'- gGGCgcgGGCgGCGggGGCCcgggCggGCGGCu -3'
miRNA:   3'- -UCGa--CUGgCGCuuCUGGaa--Ga-CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 100820 0.67 0.953005
Target:  5'- uGCcgGGCgGCGggGGCCg---GCAGCc -3'
miRNA:   3'- uCGa-CUGgCGCuuCUGGaagaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 100365 0.67 0.953005
Target:  5'- aGGUgGACUGCGAGGugGCCgacgUCcGCGGCg -3'
miRNA:   3'- -UCGaCUGGCGCUUC--UGGa---AGaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 44877 0.67 0.948839
Target:  5'- cGCUGcaACuCGCGGAcGACCUgcgUCUGCcGCc -3'
miRNA:   3'- uCGAC--UG-GCGCUU-CUGGA---AGACGuUG- -5'
10855 5' -53.4 NC_002794.1 + 152788 0.67 0.948839
Target:  5'- cGCUGACCGCGcgcGAgCUgCUGCu-- -3'
miRNA:   3'- uCGACUGGCGCuu-CUgGAaGACGuug -5'
10855 5' -53.4 NC_002794.1 + 143494 0.68 0.944435
Target:  5'- cGCUGGCCGCGggG-----CUGCAGa -3'
miRNA:   3'- uCGACUGGCGCuuCuggaaGACGUUg -5'
10855 5' -53.4 NC_002794.1 + 113937 0.68 0.944435
Target:  5'- aGGCgacgGGCCGCugccGGGCUUcCUGCAGCc -3'
miRNA:   3'- -UCGa---CUGGCGcu--UCUGGAaGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 158940 0.68 0.934902
Target:  5'- cGUguuuaGCCGCGAGGuACUUgCUGCAACa -3'
miRNA:   3'- uCGac---UGGCGCUUC-UGGAaGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 121155 0.68 0.934902
Target:  5'- ---aGGCUGCGAAGGCgUUCagaucgGCAGCg -3'
miRNA:   3'- ucgaCUGGCGCUUCUGgAAGa-----CGUUG- -5'
10855 5' -53.4 NC_002794.1 + 102181 0.68 0.934902
Target:  5'- uGGCgcGCgGCGAGGACCUg--GCGGCc -3'
miRNA:   3'- -UCGacUGgCGCUUCUGGAagaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 119309 0.68 0.934902
Target:  5'- gAGCUGACagaGCucgugGAGGAUCUcggcgacgCUGCGACa -3'
miRNA:   3'- -UCGACUGg--CG-----CUUCUGGAa-------GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 113232 0.68 0.934902
Target:  5'- gGGC-GACCGCcguccAGGAUCUcccgCUGCAGCg -3'
miRNA:   3'- -UCGaCUGGCGc----UUCUGGAa---GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 39543 0.68 0.934902
Target:  5'- gGGCUG-CUGUGc-GGCC-UCUGCGGCg -3'
miRNA:   3'- -UCGACuGGCGCuuCUGGaAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 11449 0.68 0.92977
Target:  5'- gAGCUcGCCGCcaccGgcGACUauUUCUGCGACu -3'
miRNA:   3'- -UCGAcUGGCG----CuuCUGG--AAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 30751 0.68 0.924393
Target:  5'- cGGCUGGCgCGCugGAGGAUCUggaagcgCUGCAc- -3'
miRNA:   3'- -UCGACUG-GCG--CUUCUGGAa------GACGUug -5'
10855 5' -53.4 NC_002794.1 + 192012 0.69 0.91877
Target:  5'- cGGCggUGGCCGCGGcuGCUguUUCUGUGGCg -3'
miRNA:   3'- -UCG--ACUGGCGCUucUGG--AAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 44992 0.69 0.91877
Target:  5'- cGCcuUGGCCGUGcGGACCUgUUGCAGa -3'
miRNA:   3'- uCG--ACUGGCGCuUCUGGAaGACGUUg -5'
10855 5' -53.4 NC_002794.1 + 137416 0.69 0.912904
Target:  5'- cGCggacGCCGCGGAGACCgcgccggcgcUCUGgAACg -3'
miRNA:   3'- uCGac--UGGCGCUUCUGGa---------AGACgUUG- -5'
10855 5' -53.4 NC_002794.1 + 124903 0.69 0.912904
Target:  5'- gAGCUGGuCCGCGA-GACCg---GCGAg -3'
miRNA:   3'- -UCGACU-GGCGCUuCUGGaagaCGUUg -5'
10855 5' -53.4 NC_002794.1 + 103792 0.69 0.912904
Target:  5'- cGGCUGAgCuuGAGGugCgcCUGCGACg -3'
miRNA:   3'- -UCGACUgGcgCUUCugGaaGACGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.