miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10855 5' -53.4 NC_002794.1 + 11449 0.68 0.92977
Target:  5'- gAGCUcGCCGCcaccGgcGACUauUUCUGCGACu -3'
miRNA:   3'- -UCGAcUGGCG----CuuCUGG--AAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 19897 0.7 0.887031
Target:  5'- cGCUG-CCGCGAGcacGACCUgacccgcCUGCAGu -3'
miRNA:   3'- uCGACuGGCGCUU---CUGGAa------GACGUUg -5'
10855 5' -53.4 NC_002794.1 + 21879 0.66 0.970407
Target:  5'- aGGCcGGCCGCGggGuguCCgcggcCUGCGu- -3'
miRNA:   3'- -UCGaCUGGCGCuuCu--GGaa---GACGUug -5'
10855 5' -53.4 NC_002794.1 + 30751 0.68 0.924393
Target:  5'- cGGCUGGCgCGCugGAGGAUCUggaagcgCUGCAc- -3'
miRNA:   3'- -UCGACUG-GCG--CUUCUGGAa------GACGUug -5'
10855 5' -53.4 NC_002794.1 + 36851 0.71 0.824592
Target:  5'- cGUagGugUGCGGAGACCgccaCUGCAGCc -3'
miRNA:   3'- uCGa-CugGCGCUUCUGGaa--GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 37380 0.67 0.964112
Target:  5'- gGGCgcaGGCCGuCGAAGucgcuguagagcGCCcgCUGCAGCc -3'
miRNA:   3'- -UCGa--CUGGC-GCUUC------------UGGaaGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 39543 0.68 0.934902
Target:  5'- gGGCUG-CUGUGc-GGCC-UCUGCGGCg -3'
miRNA:   3'- -UCGACuGGCGCuuCUGGaAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 42748 1.1 0.005094
Target:  5'- gAGCUGACCGCGAAGACCUUCUGCAACu -3'
miRNA:   3'- -UCGACUGGCGCUUCUGGAAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 44877 0.67 0.948839
Target:  5'- cGCUGcaACuCGCGGAcGACCUgcgUCUGCcGCc -3'
miRNA:   3'- uCGAC--UG-GCGCUU-CUGGA---AGACGuUG- -5'
10855 5' -53.4 NC_002794.1 + 44992 0.69 0.91877
Target:  5'- cGCcuUGGCCGUGcGGACCUgUUGCAGa -3'
miRNA:   3'- uCG--ACUGGCGCuUCUGGAaGACGUUg -5'
10855 5' -53.4 NC_002794.1 + 50360 0.66 0.980554
Target:  5'- cGCcaUGACCGCGGAG-CCggCcgGCAGg -3'
miRNA:   3'- uCG--ACUGGCGCUUCuGGaaGa-CGUUg -5'
10855 5' -53.4 NC_002794.1 + 55742 0.67 0.956936
Target:  5'- cGGC--ACCGCGAGccacgUCUUCUGCAGCu -3'
miRNA:   3'- -UCGacUGGCGCUUcu---GGAAGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 60719 0.7 0.857478
Target:  5'- -cCUGAUCGCcGAGACgCUgccgCUGCAGCa -3'
miRNA:   3'- ucGACUGGCGcUUCUG-GAa---GACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 63101 0.7 0.865194
Target:  5'- cGCUGccgcACCGCGccaACCUccUCUGCAACu -3'
miRNA:   3'- uCGAC----UGGCGCuucUGGA--AGACGUUG- -5'
10855 5' -53.4 NC_002794.1 + 63779 0.7 0.865194
Target:  5'- cAGCUGAUCGuCGAAGugCggaaCcGCGACg -3'
miRNA:   3'- -UCGACUGGC-GCUUCugGaa--GaCGUUG- -5'
10855 5' -53.4 NC_002794.1 + 68136 0.7 0.865194
Target:  5'- uGCUGAuCCGCG-AGACC--CUGCAcaACa -3'
miRNA:   3'- uCGACU-GGCGCuUCUGGaaGACGU--UG- -5'
10855 5' -53.4 NC_002794.1 + 70270 0.7 0.857478
Target:  5'- cGgaGGCCGCGAAGGCCggagaGCAGg -3'
miRNA:   3'- uCgaCUGGCGCUUCUGGaaga-CGUUg -5'
10855 5' -53.4 NC_002794.1 + 74193 0.72 0.798018
Target:  5'- cGCgacACCGCGAAGACCUcuacCUGCucAACg -3'
miRNA:   3'- uCGac-UGGCGCUUCUGGAa---GACG--UUG- -5'
10855 5' -53.4 NC_002794.1 + 74272 0.7 0.865194
Target:  5'- -cCUGACCGCGcAGACCagccUCUGCu-- -3'
miRNA:   3'- ucGACUGGCGCuUCUGGa---AGACGuug -5'
10855 5' -53.4 NC_002794.1 + 77056 0.7 0.879976
Target:  5'- cGCgGACCGCGucccGCUUUCUGCAc- -3'
miRNA:   3'- uCGaCUGGCGCuuc-UGGAAGACGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.