miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 128944 0.66 0.642547
Target:  5'- uCCGGUGgaGCCUGCgccggacgagucgcuCGAUCUgGUGCa -3'
miRNA:   3'- uGGCCACg-CGGACG---------------GCUGGAgCGCGa -5'
10856 3' -63.8 NC_002794.1 + 151692 0.66 0.638711
Target:  5'- uUgGGU-CGCCccGCCGGCCgagCGCGCc -3'
miRNA:   3'- uGgCCAcGCGGa-CGGCUGGa--GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 185318 0.66 0.638711
Target:  5'- cCCaGUGuCGCCUccacacccgcGUCGACCgcUCGCGCg -3'
miRNA:   3'- uGGcCAC-GCGGA----------CGGCUGG--AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 75289 0.66 0.638711
Target:  5'- gGCCGGccgGCGCCUcgccaGCCGACaUgGCGaCa -3'
miRNA:   3'- -UGGCCa--CGCGGA-----CGGCUGgAgCGC-Ga -5'
10856 3' -63.8 NC_002794.1 + 38444 0.66 0.638711
Target:  5'- gGCCGGacUGaggaGCCgGCgCGGCCgcggCGCGCc -3'
miRNA:   3'- -UGGCC--ACg---CGGaCG-GCUGGa---GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 80937 0.66 0.638711
Target:  5'- aACCGacuucUGCGCCUGCCGcGCCaagcUCGgGUUc -3'
miRNA:   3'- -UGGCc----ACGCGGACGGC-UGG----AGCgCGA- -5'
10856 3' -63.8 NC_002794.1 + 76533 0.66 0.638711
Target:  5'- cACCGGccGCGgC-GCCGACgCggUCGCGCg -3'
miRNA:   3'- -UGGCCa-CGCgGaCGGCUG-G--AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 183666 0.66 0.638711
Target:  5'- cGCCGGgcccgaGCGCCgacggGUCGAgcgcCCgccgCGCGCg -3'
miRNA:   3'- -UGGCCa-----CGCGGa----CGGCU----GGa---GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 192639 0.66 0.638711
Target:  5'- gGCCGcuccagccGCGCC-GCCGcGCgCUCGCGCg -3'
miRNA:   3'- -UGGCca------CGCGGaCGGC-UG-GAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 151738 0.66 0.629118
Target:  5'- gUCGGc-CGCCgGUCG-CCUCGCGCg -3'
miRNA:   3'- uGGCCacGCGGaCGGCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 58132 0.66 0.629118
Target:  5'- cCUGGgcgGCcugGCCcGCCG-CCUCGUGCa -3'
miRNA:   3'- uGGCCa--CG---CGGaCGGCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 69028 0.66 0.629118
Target:  5'- cGCCGGcGC-CCUcGCCGGCUUCcuCGCUc -3'
miRNA:   3'- -UGGCCaCGcGGA-CGGCUGGAGc-GCGA- -5'
10856 3' -63.8 NC_002794.1 + 59111 0.66 0.629118
Target:  5'- aGCCcuucGUcGCgGCCaccgagGCCGACUUCGCGCa -3'
miRNA:   3'- -UGGc---CA-CG-CGGa-----CGGCUGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 144437 0.66 0.629118
Target:  5'- cGCCGaGUGCaGCCgUGCgCGcACCU-GCGCg -3'
miRNA:   3'- -UGGC-CACG-CGG-ACG-GC-UGGAgCGCGa -5'
10856 3' -63.8 NC_002794.1 + 90226 0.66 0.629118
Target:  5'- cGCCGGaGCcccGCCUGUgGuCCcCGCGCg -3'
miRNA:   3'- -UGGCCaCG---CGGACGgCuGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 835 0.66 0.619527
Target:  5'- uCCGGUccccgGCGCgUGCguuCGGCCcagCGCGCg -3'
miRNA:   3'- uGGCCA-----CGCGgACG---GCUGGa--GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 194311 0.66 0.619527
Target:  5'- cGCCa--GCGCCUGCCGcaGCggaUCGCGCc -3'
miRNA:   3'- -UGGccaCGCGGACGGC--UGg--AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 28679 0.66 0.619527
Target:  5'- cGCCGGUG-GCCgucGCCGccGCCgUUGCuGCUg -3'
miRNA:   3'- -UGGCCACgCGGa--CGGC--UGG-AGCG-CGA- -5'
10856 3' -63.8 NC_002794.1 + 44443 0.66 0.619527
Target:  5'- cACCGGcGCGCCcGCCcgGACgUCG-GCg -3'
miRNA:   3'- -UGGCCaCGCGGaCGG--CUGgAGCgCGa -5'
10856 3' -63.8 NC_002794.1 + 107515 0.66 0.619527
Target:  5'- uGCCGGUcGaCGCCgacgGCCGGCgCg-GCGCc -3'
miRNA:   3'- -UGGCCA-C-GCGGa---CGGCUG-GagCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.