Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10856 | 3' | -63.8 | NC_002794.1 | + | 147336 | 0.66 | 0.604202 |
Target: 5'- gGCCGaucucGUGCGCCgcUGCCaGACCgaauacuuugacgucUCGUGCg -3' miRNA: 3'- -UGGC-----CACGCGG--ACGG-CUGG---------------AGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 69028 | 0.66 | 0.629118 |
Target: 5'- cGCCGGcGC-CCUcGCCGGCUUCcuCGCUc -3' miRNA: 3'- -UGGCCaCGcGGA-CGGCUGGAGc-GCGA- -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 107515 | 0.66 | 0.619527 |
Target: 5'- uGCCGGUcGaCGCCgacgGCCGGCgCg-GCGCc -3' miRNA: 3'- -UGGCCA-C-GCGGa---CGGCUG-GagCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 58132 | 0.66 | 0.629118 |
Target: 5'- cCUGGgcgGCcugGCCcGCCG-CCUCGUGCa -3' miRNA: 3'- uGGCCa--CG---CGGaCGGCuGGAGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 151738 | 0.66 | 0.629118 |
Target: 5'- gUCGGc-CGCCgGUCG-CCUCGCGCg -3' miRNA: 3'- uGGCCacGCGGaCGGCuGGAGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 44443 | 0.66 | 0.619527 |
Target: 5'- cACCGGcGCGCCcGCCcgGACgUCG-GCg -3' miRNA: 3'- -UGGCCaCGCGGaCGG--CUGgAGCgCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 28679 | 0.66 | 0.619527 |
Target: 5'- cGCCGGUG-GCCgucGCCGccGCCgUUGCuGCUg -3' miRNA: 3'- -UGGCCACgCGGa--CGGC--UGG-AGCG-CGA- -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 194311 | 0.66 | 0.619527 |
Target: 5'- cGCCa--GCGCCUGCCGcaGCggaUCGCGCc -3' miRNA: 3'- -UGGccaCGCGGACGGC--UGg--AGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 835 | 0.66 | 0.619527 |
Target: 5'- uCCGGUccccgGCGCgUGCguuCGGCCcagCGCGCg -3' miRNA: 3'- uGGCCA-----CGCGgACG---GCUGGa--GCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 59111 | 0.66 | 0.629118 |
Target: 5'- aGCCcuucGUcGCgGCCaccgagGCCGACUUCGCGCa -3' miRNA: 3'- -UGGc---CA-CG-CGGa-----CGGCUGGAGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 151692 | 0.66 | 0.638711 |
Target: 5'- uUgGGU-CGCCccGCCGGCCgagCGCGCc -3' miRNA: 3'- uGgCCAcGCGGa-CGGCUGGa--GCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 144437 | 0.66 | 0.629118 |
Target: 5'- cGCCGaGUGCaGCCgUGCgCGcACCU-GCGCg -3' miRNA: 3'- -UGGC-CACG-CGG-ACG-GC-UGGAgCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 192639 | 0.66 | 0.638711 |
Target: 5'- gGCCGcuccagccGCGCC-GCCGcGCgCUCGCGCg -3' miRNA: 3'- -UGGCca------CGCGGaCGGC-UG-GAGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 183666 | 0.66 | 0.638711 |
Target: 5'- cGCCGGgcccgaGCGCCgacggGUCGAgcgcCCgccgCGCGCg -3' miRNA: 3'- -UGGCCa-----CGCGGa----CGGCU----GGa---GCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 76533 | 0.66 | 0.638711 |
Target: 5'- cACCGGccGCGgC-GCCGACgCggUCGCGCg -3' miRNA: 3'- -UGGCCa-CGCgGaCGGCUG-G--AGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 80937 | 0.66 | 0.638711 |
Target: 5'- aACCGacuucUGCGCCUGCCGcGCCaagcUCGgGUUc -3' miRNA: 3'- -UGGCc----ACGCGGACGGC-UGG----AGCgCGA- -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 38444 | 0.66 | 0.638711 |
Target: 5'- gGCCGGacUGaggaGCCgGCgCGGCCgcggCGCGCc -3' miRNA: 3'- -UGGCC--ACg---CGGaCG-GCUGGa---GCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 75289 | 0.66 | 0.638711 |
Target: 5'- gGCCGGccgGCGCCUcgccaGCCGACaUgGCGaCa -3' miRNA: 3'- -UGGCCa--CGCGGA-----CGGCUGgAgCGC-Ga -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 185318 | 0.66 | 0.638711 |
Target: 5'- cCCaGUGuCGCCUccacacccgcGUCGACCgcUCGCGCg -3' miRNA: 3'- uGGcCAC-GCGGA----------CGGCUGG--AGCGCGa -5' |
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10856 | 3' | -63.8 | NC_002794.1 | + | 90226 | 0.66 | 0.629118 |
Target: 5'- cGCCGGaGCcccGCCUGUgGuCCcCGCGCg -3' miRNA: 3'- -UGGCCaCG---CGGACGgCuGGaGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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