miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 40832 1.06 0.00125
Target:  5'- gACCGGUGCGCCUGCCGACCUCGCGCUc -3'
miRNA:   3'- -UGGCCACGCGGACGGCUGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 108200 0.78 0.124689
Target:  5'- -gCGGcgcUGCGCCgccgcGCCGGCCUCGCGCc -3'
miRNA:   3'- ugGCC---ACGCGGa----CGGCUGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 106945 0.75 0.187361
Target:  5'- gGCCGGcgGCGCCUggagacacgcGUCG-CCUCGCGCg -3'
miRNA:   3'- -UGGCCa-CGCGGA----------CGGCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 68769 0.75 0.191804
Target:  5'- cGCCGGgGCGCCggacGcCCGGCuCUCGCGCc -3'
miRNA:   3'- -UGGCCaCGCGGa---C-GGCUG-GAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 107187 0.74 0.21542
Target:  5'- aGCCGGcGcCGCCgccGCCGGCCUCGCccgGCg -3'
miRNA:   3'- -UGGCCaC-GCGGa--CGGCUGGAGCG---CGa -5'
10856 3' -63.8 NC_002794.1 + 102863 0.74 0.23287
Target:  5'- gGCgUGGUGCGCCgggaucgguuucugGCCGACCUgGUGCc -3'
miRNA:   3'- -UG-GCCACGCGGa-------------CGGCUGGAgCGCGa -5'
10856 3' -63.8 NC_002794.1 + 193365 0.73 0.241486
Target:  5'- aGCCGGUGCcacggGCCgcgcuccucGCCGucguccGCCUCGCGCUc -3'
miRNA:   3'- -UGGCCACG-----CGGa--------CGGC------UGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 150537 0.73 0.252627
Target:  5'- aGCCGGgccgGCGCCaugGCCG-UCUCgGCGCUg -3'
miRNA:   3'- -UGGCCa---CGCGGa--CGGCuGGAG-CGCGA- -5'
10856 3' -63.8 NC_002794.1 + 130008 0.73 0.258355
Target:  5'- cCCGGaGCGUgcggGUCGGCCUCGCGCg -3'
miRNA:   3'- uGGCCaCGCGga--CGGCUGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 91601 0.73 0.26774
Target:  5'- cGCUGGUGCGCgCggccgagggccacGCCGACCUCcuGCGCc -3'
miRNA:   3'- -UGGCCACGCG-Ga------------CGGCUGGAG--CGCGa -5'
10856 3' -63.8 NC_002794.1 + 56916 0.73 0.270128
Target:  5'- -aCGG-GCGCCgggcUGCCGGCCUCGCa-- -3'
miRNA:   3'- ugGCCaCGCGG----ACGGCUGGAGCGcga -5'
10856 3' -63.8 NC_002794.1 + 41589 0.73 0.270128
Target:  5'- cGCaCGGacgGCGCCUcGCCGACgUCGCGgUa -3'
miRNA:   3'- -UG-GCCa--CGCGGA-CGGCUGgAGCGCgA- -5'
10856 3' -63.8 NC_002794.1 + 60644 0.73 0.276175
Target:  5'- cGCCGGcgGCGCCgGCC-ACCcggCGCGCg -3'
miRNA:   3'- -UGGCCa-CGCGGaCGGcUGGa--GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 96177 0.71 0.325678
Target:  5'- aACCuGGUgcaccgGCGCCUGCCGGCCgagucccugccgGCGCUg -3'
miRNA:   3'- -UGG-CCA------CGCGGACGGCUGGag----------CGCGA- -5'
10856 3' -63.8 NC_002794.1 + 69735 0.71 0.328459
Target:  5'- cGCCGGaGCGCCacgGCCGGCgaCGcCGCg -3'
miRNA:   3'- -UGGCCaCGCGGa--CGGCUGgaGC-GCGa -5'
10856 3' -63.8 NC_002794.1 + 117167 0.71 0.349868
Target:  5'- aGCCGcuugaGCGUCUGCCgGAUUUCGCGCa -3'
miRNA:   3'- -UGGCca---CGCGGACGG-CUGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 152143 0.71 0.355743
Target:  5'- aGCCGGUucaacccgcuccaGCGCCUgcgggccGCCGACCU-GUGCa -3'
miRNA:   3'- -UGGCCA-------------CGCGGA-------CGGCUGGAgCGCGa -5'
10856 3' -63.8 NC_002794.1 + 138937 0.71 0.357222
Target:  5'- uGCCGGUGCGCCc-CC-ACCguggCGUGCUg -3'
miRNA:   3'- -UGGCCACGCGGacGGcUGGa---GCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 49474 0.71 0.357222
Target:  5'- gACCGGccgccgcGgGUCUGUCGACCUCGuCGCc -3'
miRNA:   3'- -UGGCCa------CgCGGACGGCUGGAGC-GCGa -5'
10856 3' -63.8 NC_002794.1 + 154340 0.7 0.372253
Target:  5'- cCCGG-GUGCCgcgGCCGAgCUCccGCGCg -3'
miRNA:   3'- uGGCCaCGCGGa--CGGCUgGAG--CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.