miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 89974 0.7 0.379928
Target:  5'- gACCguGGUGCGCCgGCguuCGACCggUGCGCa -3'
miRNA:   3'- -UGG--CCACGCGGaCG---GCUGGa-GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 34038 0.7 0.387708
Target:  5'- aGCCGccUGCuGCCggGCCGGCC-CGCGCa -3'
miRNA:   3'- -UGGCc-ACG-CGGa-CGGCUGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 76836 0.69 0.419032
Target:  5'- gGCCGGcgaUGCGC--GCCGGCCUCGUcggcccaGCUa -3'
miRNA:   3'- -UGGCC---ACGCGgaCGGCUGGAGCG-------CGA- -5'
10856 3' -63.8 NC_002794.1 + 12012 0.69 0.436522
Target:  5'- gACUGauGUGCGCC-GCCGGCC-CGgGCg -3'
miRNA:   3'- -UGGC--CACGCGGaCGGCUGGaGCgCGa -5'
10856 3' -63.8 NC_002794.1 + 121805 0.69 0.436522
Target:  5'- gACCGGccgGCGCCUGCCGcuGCaggaUCGCu-- -3'
miRNA:   3'- -UGGCCa--CGCGGACGGC--UGg---AGCGcga -5'
10856 3' -63.8 NC_002794.1 + 14877 0.69 0.444146
Target:  5'- cCCGGUuCGCCgcgaGCCGAgaccgacCUUCGCGCUc -3'
miRNA:   3'- uGGCCAcGCGGa---CGGCU-------GGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 126591 0.69 0.444997
Target:  5'- uACCGGgacugaGCGCCgaggccggcGCCGACgUCGCGg- -3'
miRNA:   3'- -UGGCCa-----CGCGGa--------CGGCUGgAGCGCga -5'
10856 3' -63.8 NC_002794.1 + 100298 0.69 0.453564
Target:  5'- gGCUGGUGcCGCCUccgccGCUGGCa-CGCGCg -3'
miRNA:   3'- -UGGCCAC-GCGGA-----CGGCUGgaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 92073 0.69 0.46135
Target:  5'- gGCCGGUGCuGCCaGUCGugCuaccagacggccuUCGUGCg -3'
miRNA:   3'- -UGGCCACG-CGGaCGGCugG-------------AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 57398 0.69 0.462219
Target:  5'- cACCGGcuccgGCGCCcGCgUGGCCggCGUGCUg -3'
miRNA:   3'- -UGGCCa----CGCGGaCG-GCUGGa-GCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 128545 0.69 0.462219
Target:  5'- uCgGGUGCGCCguccUGCUGGUCaUCGCGCUc -3'
miRNA:   3'- uGgCCACGCGG----ACGGCUGG-AGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 38506 0.68 0.470961
Target:  5'- cGCCGGU-CGCC-GCCG-CCUC-CGCg -3'
miRNA:   3'- -UGGCCAcGCGGaCGGCuGGAGcGCGa -5'
10856 3' -63.8 NC_002794.1 + 122685 0.68 0.470961
Target:  5'- uGCCGGUcGCGCCagcGCCGGgCgacguUCGUGCg -3'
miRNA:   3'- -UGGCCA-CGCGGa--CGGCUgG-----AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 93034 0.68 0.470961
Target:  5'- cCCGGUGCGCggCUGCCuGGCCUuCcUGCUc -3'
miRNA:   3'- uGGCCACGCG--GACGG-CUGGA-GcGCGA- -5'
10856 3' -63.8 NC_002794.1 + 101035 0.68 0.470961
Target:  5'- gGCCGG-GCGCggGUCGGCCgcuacugCGUGCa -3'
miRNA:   3'- -UGGCCaCGCGgaCGGCUGGa------GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 101450 0.68 0.479786
Target:  5'- cGCCGGcGCGCCcGCCcgaaacGCCggCGCGCc -3'
miRNA:   3'- -UGGCCaCGCGGaCGGc-----UGGa-GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 12967 0.68 0.479786
Target:  5'- gUCGGUGacgugGCCUucuuccuccugGCCGugCUCGUGCUc -3'
miRNA:   3'- uGGCCACg----CGGA-----------CGGCugGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 180273 0.68 0.487796
Target:  5'- cGCCGGUcuccucgcggcccGCGCCgccgcaacacGCCGGCCg-GCGCg -3'
miRNA:   3'- -UGGCCA-------------CGCGGa---------CGGCUGGagCGCGa -5'
10856 3' -63.8 NC_002794.1 + 58625 0.68 0.48869
Target:  5'- gACCuGGUGCGCCUGaUCG-CCaCGCaGCUg -3'
miRNA:   3'- -UGG-CCACGCGGAC-GGCuGGaGCG-CGA- -5'
10856 3' -63.8 NC_002794.1 + 58974 0.68 0.48869
Target:  5'- gGCCGa-GCGCCUGCgCGACgacgagCUgGCGCUg -3'
miRNA:   3'- -UGGCcaCGCGGACG-GCUG------GAgCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.