miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 14652 0.66 0.609945
Target:  5'- cGCCGGcgccgcgGCGUCgGuCCGACUcgcggcggcggUCGCGCUg -3'
miRNA:   3'- -UGGCCa------CGCGGaC-GGCUGG-----------AGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 147336 0.66 0.604202
Target:  5'- gGCCGaucucGUGCGCCgcUGCCaGACCgaauacuuugacgucUCGUGCg -3'
miRNA:   3'- -UGGC-----CACGCGG--ACGG-CUGG---------------AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 126385 0.66 0.600378
Target:  5'- cGCCGG-G-GCCUGCgCGGCggCGUGCg -3'
miRNA:   3'- -UGGCCaCgCGGACG-GCUGgaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 897 0.66 0.600378
Target:  5'- gGCCGG-GUGCCaacGCCGcuCCcCGCGCc -3'
miRNA:   3'- -UGGCCaCGCGGa--CGGCu-GGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 72448 0.66 0.59083
Target:  5'- gACCGGcgGCGCCccgcGcCCGGCCcCGCGg- -3'
miRNA:   3'- -UGGCCa-CGCGGa---C-GGCUGGaGCGCga -5'
10856 3' -63.8 NC_002794.1 + 57160 0.66 0.59083
Target:  5'- uGCUGcGcaagGCGCC-GCCGcACUUCGUGCUg -3'
miRNA:   3'- -UGGC-Ca---CGCGGaCGGC-UGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 34247 0.67 0.58131
Target:  5'- cGCgCGGcUGcCGCCgcagGCgGACCgCGCGCa -3'
miRNA:   3'- -UG-GCC-AC-GCGGa---CGgCUGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 82881 0.67 0.58131
Target:  5'- gACCGuGcGCGCCUcgcguccgccucGCCGuccGCCUCGCGg- -3'
miRNA:   3'- -UGGC-CaCGCGGA------------CGGC---UGGAGCGCga -5'
10856 3' -63.8 NC_002794.1 + 71097 0.67 0.58131
Target:  5'- aGCCGGU-CGCCggcgGCCuGGCCggagagGCGCUc -3'
miRNA:   3'- -UGGCCAcGCGGa---CGG-CUGGag----CGCGA- -5'
10856 3' -63.8 NC_002794.1 + 144754 0.67 0.571821
Target:  5'- cACCGGUGguucugggaaCGCagcugGCCGGCgUCGcCGCUg -3'
miRNA:   3'- -UGGCCAC----------GCGga---CGGCUGgAGC-GCGA- -5'
10856 3' -63.8 NC_002794.1 + 17428 0.67 0.571821
Target:  5'- -gCGGUcuccGCGCC-GCCGGCgCUCGgGCc -3'
miRNA:   3'- ugGCCA----CGCGGaCGGCUG-GAGCgCGa -5'
10856 3' -63.8 NC_002794.1 + 149712 0.67 0.56237
Target:  5'- gGCgGGUGgGCC-GCCuGCCUCGCuacgGCg -3'
miRNA:   3'- -UGgCCACgCGGaCGGcUGGAGCG----CGa -5'
10856 3' -63.8 NC_002794.1 + 62277 0.67 0.56237
Target:  5'- aGCCGGaGCucgGCCUGCUGccgcuccgaGCC-CGCGCg -3'
miRNA:   3'- -UGGCCaCG---CGGACGGC---------UGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 45430 0.67 0.552961
Target:  5'- cGCCGcGaGCGUCUcGCgGACCcggUCGCGCg -3'
miRNA:   3'- -UGGC-CaCGCGGA-CGgCUGG---AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 145516 0.67 0.552961
Target:  5'- --gGGUGCGCgagGCCGGCCcgaGCGCc -3'
miRNA:   3'- uggCCACGCGga-CGGCUGGag-CGCGa -5'
10856 3' -63.8 NC_002794.1 + 100767 0.67 0.5436
Target:  5'- gGCCGGUcgcggaguacacGCGCCUGCgguucgCGGCCgcuucUGCGCc -3'
miRNA:   3'- -UGGCCA------------CGCGGACG------GCUGGa----GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 184930 0.67 0.5436
Target:  5'- aGCCGGcgGuCGuCCUGCCGcagcugcgccgGCC-CGCGCa -3'
miRNA:   3'- -UGGCCa-C-GC-GGACGGC-----------UGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 41351 0.67 0.5436
Target:  5'- uCCGGggucacCGCC-GUCGGCCuUCGCGCUc -3'
miRNA:   3'- uGGCCac----GCGGaCGGCUGG-AGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 83209 0.68 0.525041
Target:  5'- cGCCGa---GCCUGCaCGugauCCUCGCGCUc -3'
miRNA:   3'- -UGGCcacgCGGACG-GCu---GGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 20594 0.68 0.525041
Target:  5'- aACUGGUGCGCUccgUGcCCGGCUUCGagauGCc -3'
miRNA:   3'- -UGGCCACGCGG---AC-GGCUGGAGCg---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.