miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 119732 0.68 0.506727
Target:  5'- cACCGG-GCGCUcGgCGugUUUGCGCa -3'
miRNA:   3'- -UGGCCaCGCGGaCgGCugGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 123887 0.68 0.504003
Target:  5'- aGCUGcUGCGUuccgcccgcccgagCUGCCG-CCUCGCGCc -3'
miRNA:   3'- -UGGCcACGCG--------------GACGGCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 58707 0.68 0.497672
Target:  5'- gGCUGGUGCGCuucCUGCaccgCG-UCUCGCGCc -3'
miRNA:   3'- -UGGCCACGCG---GACG----GCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 183177 0.68 0.49677
Target:  5'- aGCCGGUcggggaccgagacGCGCCgccacGCCGGCggCGCGUUc -3'
miRNA:   3'- -UGGCCA-------------CGCGGa----CGGCUGgaGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 147987 0.68 0.48869
Target:  5'- -gCGGUGUcCCUGCUGGCCUucgucCGCGUc -3'
miRNA:   3'- ugGCCACGcGGACGGCUGGA-----GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 58625 0.68 0.48869
Target:  5'- gACCuGGUGCGCCUGaUCG-CCaCGCaGCUg -3'
miRNA:   3'- -UGG-CCACGCGGAC-GGCuGGaGCG-CGA- -5'
10856 3' -63.8 NC_002794.1 + 192728 0.68 0.48869
Target:  5'- cGCCaGGUcGUcgGCCaGCCGguacACCUCGCGCUc -3'
miRNA:   3'- -UGG-CCA-CG--CGGaCGGC----UGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 58974 0.68 0.48869
Target:  5'- gGCCGa-GCGCCUGCgCGACgacgagCUgGCGCUg -3'
miRNA:   3'- -UGGCcaCGCGGACG-GCUG------GAgCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 180273 0.68 0.487796
Target:  5'- cGCCGGUcuccucgcggcccGCGCCgccgcaacacGCCGGCCg-GCGCg -3'
miRNA:   3'- -UGGCCA-------------CGCGGa---------CGGCUGGagCGCGa -5'
10856 3' -63.8 NC_002794.1 + 101450 0.68 0.479786
Target:  5'- cGCCGGcGCGCCcGCCcgaaacGCCggCGCGCc -3'
miRNA:   3'- -UGGCCaCGCGGaCGGc-----UGGa-GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 12967 0.68 0.479786
Target:  5'- gUCGGUGacgugGCCUucuuccuccugGCCGugCUCGUGCUc -3'
miRNA:   3'- uGGCCACg----CGGA-----------CGGCugGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 101035 0.68 0.470961
Target:  5'- gGCCGG-GCGCggGUCGGCCgcuacugCGUGCa -3'
miRNA:   3'- -UGGCCaCGCGgaCGGCUGGa------GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 93034 0.68 0.470961
Target:  5'- cCCGGUGCGCggCUGCCuGGCCUuCcUGCUc -3'
miRNA:   3'- uGGCCACGCG--GACGG-CUGGA-GcGCGA- -5'
10856 3' -63.8 NC_002794.1 + 122685 0.68 0.470961
Target:  5'- uGCCGGUcGCGCCagcGCCGGgCgacguUCGUGCg -3'
miRNA:   3'- -UGGCCA-CGCGGa--CGGCUgG-----AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 38506 0.68 0.470961
Target:  5'- cGCCGGU-CGCC-GCCG-CCUC-CGCg -3'
miRNA:   3'- -UGGCCAcGCGGaCGGCuGGAGcGCGa -5'
10856 3' -63.8 NC_002794.1 + 57398 0.69 0.462219
Target:  5'- cACCGGcuccgGCGCCcGCgUGGCCggCGUGCUg -3'
miRNA:   3'- -UGGCCa----CGCGGaCG-GCUGGa-GCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 128545 0.69 0.462219
Target:  5'- uCgGGUGCGCCguccUGCUGGUCaUCGCGCUc -3'
miRNA:   3'- uGgCCACGCGG----ACGGCUGG-AGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 92073 0.69 0.46135
Target:  5'- gGCCGGUGCuGCCaGUCGugCuaccagacggccuUCGUGCg -3'
miRNA:   3'- -UGGCCACG-CGGaCGGCugG-------------AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 100298 0.69 0.453564
Target:  5'- gGCUGGUGcCGCCUccgccGCUGGCa-CGCGCg -3'
miRNA:   3'- -UGGCCAC-GCGGA-----CGGCUGgaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 126591 0.69 0.444997
Target:  5'- uACCGGgacugaGCGCCgaggccggcGCCGACgUCGCGg- -3'
miRNA:   3'- -UGGCCa-----CGCGGa--------CGGCUGgAGCGCga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.