miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 835 0.66 0.619527
Target:  5'- uCCGGUccccgGCGCgUGCguuCGGCCcagCGCGCg -3'
miRNA:   3'- uGGCCA-----CGCGgACG---GCUGGa--GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 897 0.66 0.600378
Target:  5'- gGCCGG-GUGCCaacGCCGcuCCcCGCGCc -3'
miRNA:   3'- -UGGCCaCGCGGa--CGGCu-GGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 12012 0.69 0.436522
Target:  5'- gACUGauGUGCGCC-GCCGGCC-CGgGCg -3'
miRNA:   3'- -UGGC--CACGCGGaCGGCUGGaGCgCGa -5'
10856 3' -63.8 NC_002794.1 + 12967 0.68 0.479786
Target:  5'- gUCGGUGacgugGCCUucuuccuccugGCCGugCUCGUGCUc -3'
miRNA:   3'- uGGCCACg----CGGA-----------CGGCugGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 14652 0.66 0.609945
Target:  5'- cGCCGGcgccgcgGCGUCgGuCCGACUcgcggcggcggUCGCGCUg -3'
miRNA:   3'- -UGGCCa------CGCGGaC-GGCUGG-----------AGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 14877 0.69 0.444146
Target:  5'- cCCGGUuCGCCgcgaGCCGAgaccgacCUUCGCGCUc -3'
miRNA:   3'- uGGCCAcGCGGa---CGGCU-------GGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 17428 0.67 0.571821
Target:  5'- -gCGGUcuccGCGCC-GCCGGCgCUCGgGCc -3'
miRNA:   3'- ugGCCA----CGCGGaCGGCUG-GAGCgCGa -5'
10856 3' -63.8 NC_002794.1 + 20594 0.68 0.525041
Target:  5'- aACUGGUGCGCUccgUGcCCGGCUUCGagauGCc -3'
miRNA:   3'- -UGGCCACGCGG---AC-GGCUGGAGCg---CGa -5'
10856 3' -63.8 NC_002794.1 + 28679 0.66 0.619527
Target:  5'- cGCCGGUG-GCCgucGCCGccGCCgUUGCuGCUg -3'
miRNA:   3'- -UGGCCACgCGGa--CGGC--UGG-AGCG-CGA- -5'
10856 3' -63.8 NC_002794.1 + 34038 0.7 0.387708
Target:  5'- aGCCGccUGCuGCCggGCCGGCC-CGCGCa -3'
miRNA:   3'- -UGGCc-ACG-CGGa-CGGCUGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 34247 0.67 0.58131
Target:  5'- cGCgCGGcUGcCGCCgcagGCgGACCgCGCGCa -3'
miRNA:   3'- -UG-GCC-AC-GCGGa---CGgCUGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 38444 0.66 0.638711
Target:  5'- gGCCGGacUGaggaGCCgGCgCGGCCgcggCGCGCc -3'
miRNA:   3'- -UGGCC--ACg---CGGaCG-GCUGGa---GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 38506 0.68 0.470961
Target:  5'- cGCCGGU-CGCC-GCCG-CCUC-CGCg -3'
miRNA:   3'- -UGGCCAcGCGGaCGGCuGGAGcGCGa -5'
10856 3' -63.8 NC_002794.1 + 40832 1.06 0.00125
Target:  5'- gACCGGUGCGCCUGCCGACCUCGCGCUc -3'
miRNA:   3'- -UGGCCACGCGGACGGCUGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 41351 0.67 0.5436
Target:  5'- uCCGGggucacCGCC-GUCGGCCuUCGCGCUc -3'
miRNA:   3'- uGGCCac----GCGGaCGGCUGG-AGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 41589 0.73 0.270128
Target:  5'- cGCaCGGacgGCGCCUcGCCGACgUCGCGgUa -3'
miRNA:   3'- -UG-GCCa--CGCGGA-CGGCUGgAGCGCgA- -5'
10856 3' -63.8 NC_002794.1 + 44443 0.66 0.619527
Target:  5'- cACCGGcGCGCCcGCCcgGACgUCG-GCg -3'
miRNA:   3'- -UGGCCaCGCGGaCGG--CUGgAGCgCGa -5'
10856 3' -63.8 NC_002794.1 + 45430 0.67 0.552961
Target:  5'- cGCCGcGaGCGUCUcGCgGACCcggUCGCGCg -3'
miRNA:   3'- -UGGC-CaCGCGGA-CGgCUGG---AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 49474 0.71 0.357222
Target:  5'- gACCGGccgccgcGgGUCUGUCGACCUCGuCGCc -3'
miRNA:   3'- -UGGCCa------CgCGGACGGCUGGAGC-GCGa -5'
10856 3' -63.8 NC_002794.1 + 56916 0.73 0.270128
Target:  5'- -aCGG-GCGCCgggcUGCCGGCCUCGCa-- -3'
miRNA:   3'- ugGCCaCGCGG----ACGGCUGGAGCGcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.