miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 57160 0.66 0.59083
Target:  5'- uGCUGcGcaagGCGCC-GCCGcACUUCGUGCUg -3'
miRNA:   3'- -UGGC-Ca---CGCGGaCGGC-UGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 57398 0.69 0.462219
Target:  5'- cACCGGcuccgGCGCCcGCgUGGCCggCGUGCUg -3'
miRNA:   3'- -UGGCCa----CGCGGaCG-GCUGGa-GCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 58132 0.66 0.629118
Target:  5'- cCUGGgcgGCcugGCCcGCCG-CCUCGUGCa -3'
miRNA:   3'- uGGCCa--CG---CGGaCGGCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 58625 0.68 0.48869
Target:  5'- gACCuGGUGCGCCUGaUCG-CCaCGCaGCUg -3'
miRNA:   3'- -UGG-CCACGCGGAC-GGCuGGaGCG-CGA- -5'
10856 3' -63.8 NC_002794.1 + 58707 0.68 0.497672
Target:  5'- gGCUGGUGCGCuucCUGCaccgCG-UCUCGCGCc -3'
miRNA:   3'- -UGGCCACGCG---GACG----GCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 58974 0.68 0.48869
Target:  5'- gGCCGa-GCGCCUGCgCGACgacgagCUgGCGCUg -3'
miRNA:   3'- -UGGCcaCGCGGACG-GCUG------GAgCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 59111 0.66 0.629118
Target:  5'- aGCCcuucGUcGCgGCCaccgagGCCGACUUCGCGCa -3'
miRNA:   3'- -UGGc---CA-CG-CGGa-----CGGCUGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 60644 0.73 0.276175
Target:  5'- cGCCGGcgGCGCCgGCC-ACCcggCGCGCg -3'
miRNA:   3'- -UGGCCa-CGCGGaCGGcUGGa--GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 62277 0.67 0.56237
Target:  5'- aGCCGGaGCucgGCCUGCUGccgcuccgaGCC-CGCGCg -3'
miRNA:   3'- -UGGCCaCG---CGGACGGC---------UGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 68769 0.75 0.191804
Target:  5'- cGCCGGgGCGCCggacGcCCGGCuCUCGCGCc -3'
miRNA:   3'- -UGGCCaCGCGGa---C-GGCUG-GAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 69028 0.66 0.629118
Target:  5'- cGCCGGcGC-CCUcGCCGGCUUCcuCGCUc -3'
miRNA:   3'- -UGGCCaCGcGGA-CGGCUGGAGc-GCGA- -5'
10856 3' -63.8 NC_002794.1 + 69735 0.71 0.328459
Target:  5'- cGCCGGaGCGCCacgGCCGGCgaCGcCGCg -3'
miRNA:   3'- -UGGCCaCGCGGa--CGGCUGgaGC-GCGa -5'
10856 3' -63.8 NC_002794.1 + 71097 0.67 0.58131
Target:  5'- aGCCGGU-CGCCggcgGCCuGGCCggagagGCGCUc -3'
miRNA:   3'- -UGGCCAcGCGGa---CGG-CUGGag----CGCGA- -5'
10856 3' -63.8 NC_002794.1 + 72448 0.66 0.59083
Target:  5'- gACCGGcgGCGCCccgcGcCCGGCCcCGCGg- -3'
miRNA:   3'- -UGGCCa-CGCGGa---C-GGCUGGaGCGCga -5'
10856 3' -63.8 NC_002794.1 + 75289 0.66 0.638711
Target:  5'- gGCCGGccgGCGCCUcgccaGCCGACaUgGCGaCa -3'
miRNA:   3'- -UGGCCa--CGCGGA-----CGGCUGgAgCGC-Ga -5'
10856 3' -63.8 NC_002794.1 + 76533 0.66 0.638711
Target:  5'- cACCGGccGCGgC-GCCGACgCggUCGCGCg -3'
miRNA:   3'- -UGGCCa-CGCgGaCGGCUG-G--AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 76836 0.69 0.419032
Target:  5'- gGCCGGcgaUGCGC--GCCGGCCUCGUcggcccaGCUa -3'
miRNA:   3'- -UGGCC---ACGCGgaCGGCUGGAGCG-------CGA- -5'
10856 3' -63.8 NC_002794.1 + 80937 0.66 0.638711
Target:  5'- aACCGacuucUGCGCCUGCCGcGCCaagcUCGgGUUc -3'
miRNA:   3'- -UGGCc----ACGCGGACGGC-UGG----AGCgCGA- -5'
10856 3' -63.8 NC_002794.1 + 82881 0.67 0.58131
Target:  5'- gACCGuGcGCGCCUcgcguccgccucGCCGuccGCCUCGCGg- -3'
miRNA:   3'- -UGGC-CaCGCGGA------------CGGC---UGGAGCGCga -5'
10856 3' -63.8 NC_002794.1 + 83209 0.68 0.525041
Target:  5'- cGCCGa---GCCUGCaCGugauCCUCGCGCUc -3'
miRNA:   3'- -UGGCcacgCGGACG-GCu---GGAGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.